BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0033.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778168.1| LysR family transcription regulator protein ... 485 e-135 ref|YP_004755058.1| LysR family transcriptional regulator [Colli... 394 e-107 ref|ZP_08275028.1| Transcriptional regulator, LysR family [Oxalo... 368 e-100 ref|YP_728090.1| LysR family transcriptional regulator [Ralstoni... 328 5e-88 ref|YP_003606681.1| transcriptional regulator, LysR family [Burk... 328 7e-88 >ref|YP_003778168.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66260.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 252/294 (85%), Positives = 273/294 (92%) Query: 1 MDLTQLRAFIAVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGIGLFNRSASGMVLTAE 60 MDLTQLRAFI+VAHEGNLTRAA+KLHLTQPAVSLQIK LQESLG+ LFNRSA+GMVLTAE Sbjct: 1 MDLTQLRAFISVAHEGNLTRAADKLHLTQPAVSLQIKGLQESLGLQLFNRSAAGMVLTAE 60 Query: 61 GNTLLPLAERVLSDVQALRRHATDLRSSENIVSGTLAIGTILDPEFIRLGAFLKLLVERH 120 GN LLPLAERVL+DVQ LRRHA D RSS +SG+LAIGTILDPEFIRLG FLKLLVERH Sbjct: 61 GNKLLPLAERVLADVQELRRHAADFRSSTGELSGSLAIGTILDPEFIRLGGFLKLLVERH 120 Query: 121 PQLSTQLAHHMSGSVLNEVRAGHLDVGFFLGDPGKGFHAMTLTSFSYNVIAPAGWKNRVS 180 PQLSTQLAHHMSGSVLNE+RAG LDVGFFLG PG+GF +M LTSF+Y VIAPAGWKNRVS Sbjct: 121 PQLSTQLAHHMSGSVLNEIRAGKLDVGFFLGAPGQGFQSMELTSFTYKVIAPAGWKNRVS 180 Query: 181 GKGWKELARLPWIWTPPESAHHRLLSKIFAQHQIKPQTVALVDQESSMLDLVKSGVGLSL 240 GKGWKEL+RLPWIWTPPESAHHRLLS+IFAQHQ+KP TVALVDQESSMLDLVKSGVGLSL Sbjct: 181 GKGWKELSRLPWIWTPPESAHHRLLSRIFAQHQVKPHTVALVDQESSMLDLVKSGVGLSL 240 Query: 241 ARESIALNQAHAHGLVIADAVELSTELSFIALEKRQHEAAIKAVFQLLQQVWQN 294 AR SIALNQAHAHGLVIADAVELST+LSFI LEK QH+ I+AVF+LLQ++WQ+ Sbjct: 241 ARASIALNQAHAHGLVIADAVELSTQLSFICLEKWQHDPVIQAVFRLLQEIWQS 294 >ref|YP_004755058.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64235.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 295 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 201/295 (68%), Positives = 238/295 (80%), Gaps = 1/295 (0%) Query: 1 MDLTQLRAFIAVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGIGLFNRSASGMVLTAE 60 MD+TQLRAF+ VA EGNLTRAAE LH+TQPAVSLQIK+LQ SL + LF R SGM LT + Sbjct: 1 MDITQLRAFVTVAREGNLTRAAELLHVTQPAVSLQIKSLQASLNLQLFTRIPSGMALTDD 60 Query: 61 GNTLLPLAERVLSDVQALRRHATDLRS-SENIVSGTLAIGTILDPEFIRLGAFLKLLVER 119 G L+P AER ++ + LR+ A L S S I+SG LAIGTILDPEFIRLGAFL+ LVE Sbjct: 61 GVKLMPFAERAIAAMAELRQQAESLHSNSSEILSGKLAIGTILDPEFIRLGAFLQRLVES 120 Query: 120 HPQLSTQLAHHMSGSVLNEVRAGHLDVGFFLGDPGKGFHAMTLTSFSYNVIAPAGWKNRV 179 +PQLSTQL H MSG VL ++++GHLDVG++LG P K FH +TLT F+Y V+AP+GWK+RV Sbjct: 121 YPQLSTQLQHSMSGDVLQQIKSGHLDVGYYLGTPNKNFHRLTLTQFTYCVLAPSGWKSRV 180 Query: 180 SGKGWKELARLPWIWTPPESAHHRLLSKIFAQHQIKPQTVALVDQESSMLDLVKSGVGLS 239 SGK W LA+LPWIWTPPESAHHRLLSK FAQ+++ P VALVDQE SMLDLVKSGVGLS Sbjct: 181 SGKDWPALAKLPWIWTPPESAHHRLLSKTFAQYKVTPNKVALVDQEPSMLDLVKSGVGLS 240 Query: 240 LARESIALNQAHAHGLVIADAVELSTELSFIALEKRQHEAAIKAVFQLLQQVWQN 294 L RES+AL +AHAHGLVI+D V LSTELSFI LEKR+ E I A+F +LQ +W+N Sbjct: 241 LVRESVALREAHAHGLVISDTVNLSTELSFITLEKRKDEPVIAAIFAILQSIWKN 295 >ref|ZP_08275028.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF31502.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 291 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 194/293 (66%), Positives = 227/293 (77%), Gaps = 3/293 (1%) Query: 1 MDLTQLRAFIAVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGIGLFNRSASGMVLTAE 60 MD TQLRAF+ +A EGNLTRAA+ LHLTQPAVSLQ+K+LQ++LG+ LF RS GM LTA+ Sbjct: 1 MDFTQLRAFVTIAREGNLTRAAQHLHLTQPAVSLQLKSLQKALGVTLFTRSPGGMQLTAD 60 Query: 61 GNTLLPLAERVLSDVQALRRHATDLRSSENIVSGTLAIGTILDPEFIRLGAFLKLLVERH 120 G LLP AERVL+ + + L+SS +SG LAIGTILDPEF RLGAFLK LVE H Sbjct: 61 GEKLLPFAERVLTGIAEFHQGVRALQSS---ISGPLAIGTILDPEFTRLGAFLKRLVESH 117 Query: 121 PQLSTQLAHHMSGSVLNEVRAGHLDVGFFLGDPGKGFHAMTLTSFSYNVIAPAGWKNRVS 180 PQLSTQL MSG+VL +VR G LD G++LG P K FH LTSF+YNV+AP GWK RV+ Sbjct: 118 PQLSTQLRQGMSGNVLQQVRTGTLDAGYYLGIPPKEFHFQILTSFTYNVVAPQGWKARVA 177 Query: 181 GKGWKELARLPWIWTPPESAHHRLLSKIFAQHQIKPQTVALVDQESSMLDLVKSGVGLSL 240 GK W LA LPWIW PPESAHHRLL K FA+++ P+ VALVDQESSMLDLVKSGVGLSL Sbjct: 178 GKDWDALATLPWIWAPPESAHHRLLIKKFAEYKTLPEQVALVDQESSMLDLVKSGVGLSL 237 Query: 241 ARESIALNQAHAHGLVIADAVELSTELSFIALEKRQHEAAIKAVFQLLQQVWQ 293 RESIAL++AH HGLVIAD V LSTEL+FI+L+ R+ E AI + F LL +W Sbjct: 238 VRESIALHEAHVHGLVIADTVSLSTELTFISLQNRKTEPAIASAFDLLADLWH 290 >ref|YP_728090.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94722.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 325 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 175/297 (58%), Positives = 220/297 (74%), Gaps = 7/297 (2%) Query: 1 MDLTQLRAFIAVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGIGLFNRSASGMVLTAE 60 +DL LRAF+AVA EGNLTRAA++LHLTQPAVSLQ+KALQ + I LF R+A+G+ LTA+ Sbjct: 31 LDLHHLRAFVAVAREGNLTRAAQRLHLTQPAVSLQLKALQSAWRIRLFERTAAGLTLTAD 90 Query: 61 GNTLLPLAERVLSDVQALRRHATDLRSSENIVSGTLAIGTILDPEFIRLGAFLKLLVERH 120 G LLPLAER+L V L+ + + + V G LAIGTILDPEF RLG L+ LVERH Sbjct: 91 GAALLPLAERILDGVGNLQHTVSAMHHT---VRGRLAIGTILDPEFTRLGPMLRTLVERH 147 Query: 121 PQLSTQLAHHMSGSVLNEVRAGHLDVGFFLGD-PGKGFHAMTLTSFSYNVIAPAGWKNRV 179 PQ+ T+L H MSG VL +VR+G LDVGF+LG P GFHA+TLT FSY V+AP GWK R Sbjct: 148 PQIGTELRHGMSGWVLQQVRSGALDVGFYLGQPPDAGFHALTLTPFSYYVVAPKGWKERT 207 Query: 180 SGKGWKELARLPWIWTPPESAHHRLLSKIFAQHQIKPQ---TVALVDQESSMLDLVKSGV 236 + + W +LA LPWIWTPPESAH+RLLS FAQ + P VA VDQE+SMLDLV+SGV Sbjct: 208 ALRSWAQLATLPWIWTPPESAHNRLLSARFAQAGVDPAGVPKVAHVDQEASMLDLVRSGV 267 Query: 237 GLSLARESIALNQAHAHGLVIADAVELSTELSFIALEKRQHEAAIKAVFQLLQQVWQ 293 GLSL R++IAL ++HAHGLVI + V + TEL+ + L R+ + + AVF + + V++ Sbjct: 268 GLSLVRDAIALRESHAHGLVIVEGVSVQTELTLVCLATRRDDPVVAAVFGVAESVFR 324 >ref|YP_003606681.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gb|ADG17170.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 299 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 176/300 (58%), Positives = 215/300 (71%), Gaps = 11/300 (3%) Query: 1 MDLTQLRAFIAVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGIGLFNRSASGMVLTAE 60 MDLT LRAF+ VA EGNLTRAA +LHLTQPAVSLQIK LQE+LG+ LF R++ G+ LT + Sbjct: 1 MDLTLLRAFVTVAREGNLTRAAVQLHLTQPAVSLQIKHLQETLGVTLFTRTSHGLALTRD 60 Query: 61 GNTLLPLAERVLSDVQALRRHATDLRSSENIVSGTLAIGTILDPEFIRLGAFLKLLVERH 120 G LLP AER L + R A LR V G L IGTILDPEF+RLG FLK LVE Sbjct: 61 GQALLPHAERALGAAADVERAAQTLRQE---VRGRLRIGTILDPEFLRLGGFLKQLVETR 117 Query: 121 PQLSTQLAHHMSGSVLNEVRAGHLDVGFFLGDP-------GKGFHAMTLTSFSYNVIAPA 173 PQ+ T L H MSG V ++RAG LDVG+++G P G FHA+TLT F Y V+APA Sbjct: 118 PQIETALRHGMSGWVREQIRAGELDVGYYIGLPDDDDTRDGATFHAVTLTHFQYRVLAPA 177 Query: 174 GWKNRVSG-KGWKELARLPWIWTPPESAHHRLLSKIFAQHQIKPQTVALVDQESSMLDLV 232 GWK+RV G + W+ LA LPWIWTPP SAH+RLLS+ F + +KP VA VDQE SMLDLV Sbjct: 178 GWKDRVKGARDWRSLAALPWIWTPPASAHNRLLSRCFGEAGVKPVKVAEVDQEPSMLDLV 237 Query: 233 KSGVGLSLARESIALNQAHAHGLVIADAVELSTELSFIALEKRQHEAAIKAVFQLLQQVW 292 KSGVGL+LAR++ A+ +AHAH L I D + + T+LSFI L++R+ E AI A +L++Q W Sbjct: 238 KSGVGLTLARDATAIAEAHAHALTIVDGITVPTQLSFITLDERKDEPAIAAALKLIEQQW 297