BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0032.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protein [Herbaspiri...   149   1e-34
gb|ACY56505.1| (+) gamma-lactamase [Microbacterium hydrocarbonox...   115   2e-24
ref|YP_002945535.1| ferredoxin [Variovorax paradoxus S110] >gi|2...   115   2e-24
ref|YP_001889377.1| ferredoxin [Burkholderia phytofirmans PsJN] ...   115   2e-24
ref|ZP_06839550.1| ferredoxin [Burkholderia sp. Ch1-1] >gi|29589...   115   3e-24

>ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ66261.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae
          SmR1]
          Length = 100

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/99 (78%), Positives = 79/99 (79%)

Query: 1  MDSKKPFLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAY 60
          M S   FL+ IQPSGLQFEQV G SVL S L   IRLPNSCRNGTCRTCMCKL TG I Y
Sbjct: 1  MSSSIRFLVRIQPSGLQFEQVPGRSVLLSALSASIRLPNSCRNGTCRTCMCKLSTGRIDY 60

Query: 61 QIEWPGLTREEKAEGWILPCVAEARSDLVLDVPAAVDLK 99
          QIEWPGLTREEKAEGWILPCVAEA SDL L VP AVD K
Sbjct: 61 QIEWPGLTREEKAEGWILPCVAEAASDLELLVPDAVDPK 99


>gb|ACY56505.1| (+) gamma-lactamase [Microbacterium hydrocarbonoxydans]
          Length = 154

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/82 (63%), Positives = 65/82 (79%)

Query: 7  FLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAYQIEWPG 66
          F + +QPSGL+FE  A  ++L +    GI+LP+SCRNGTCR CMC +  GEIAY+IEWPG
Sbjct: 9  FPVLVQPSGLRFEADADSTLLAAAQAAGIKLPSSCRNGTCRACMCLMLEGEIAYRIEWPG 68

Query: 67 LTREEKAEGWILPCVAEARSDL 88
          L+R+EK EGWILPCVA+ARS L
Sbjct: 69 LSRDEKEEGWILPCVAQARSPL 90


>ref|YP_002945535.1| ferredoxin [Variovorax paradoxus S110]
 gb|ACS20269.1| ferredoxin [Variovorax paradoxus S110]
          Length = 93

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 68/87 (78%)

Query: 9  IAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAYQIEWPGLT 68
          + ++PSGL F+  AG ++L+S    GI +P+SCRNGTCRTC+C+L  G I + IEWPGL+
Sbjct: 3  VRLEPSGLGFDAEAGTTLLKSAEAAGIEMPSSCRNGTCRTCICQLVAGSIRHIIEWPGLS 62

Query: 69 REEKAEGWILPCVAEARSDLVLDVPAA 95
           EEKAEGWILPCVAEA+SDL +D P A
Sbjct: 63 AEEKAEGWILPCVAEAQSDLTIDAPQA 89


>ref|YP_001889377.1| ferredoxin [Burkholderia phytofirmans PsJN]
 gb|ACD20007.1| ferredoxin [Burkholderia phytofirmans PsJN]
          Length = 103

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 71/97 (73%)

Query: 2  DSKKPFLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAYQ 61
          DS +P L+ ++P G  FE    L++L++     +RLP SCRNGTCRTC+CK+  G + Y 
Sbjct: 3  DSTRPPLVRVEPLGYSFEAPDSLTILEAAGFANLRLPRSCRNGTCRTCLCKMTAGRVRYT 62

Query: 62 IEWPGLTREEKAEGWILPCVAEARSDLVLDVPAAVDL 98
          IEWPGL+REEK EG+ILPCVA A SD+V++ P AV+L
Sbjct: 63 IEWPGLSREEKQEGYILPCVAIAESDVVIEAPDAVEL 99


>ref|ZP_06839550.1| ferredoxin [Burkholderia sp. Ch1-1]
 gb|EFG73091.1| ferredoxin [Burkholderia sp. Ch1-1]
          Length = 103

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 72/97 (74%)

Query: 2  DSKKPFLIAIQPSGLQFEQVAGLSVLQSGLRVGIRLPNSCRNGTCRTCMCKLFTGEIAYQ 61
          DS +P L+ ++P G  FE    L++L++     +RLP SCRNGTCRTC+CK+  G + Y 
Sbjct: 3  DSIRPPLVRVEPLGRSFEAPDSLTILEAADFANLRLPRSCRNGTCRTCICKMTAGRVRYS 62

Query: 62 IEWPGLTREEKAEGWILPCVAEARSDLVLDVPAAVDL 98
          IEWPGL+REEK EG+ILPCVA A SD+V++VP AV+L
Sbjct: 63 IEWPGLSREEKQEGYILPCVAIAESDVVIEVPDAVEL 99