BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0029.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778171.1| LysR family transcription regulator protein ... 605 e-171 ref|YP_004755067.1| transcriptional regulatory protein [Collimon... 479 e-133 ref|YP_001355337.1| LysR family transcriptional regulator [Janth... 478 e-133 ref|YP_001101646.1| LysR family transcriptional regulator [Hermi... 469 e-130 ref|YP_002942074.1| LysR family transcriptional regulator [Vario... 347 1e-93 >ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66263.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 316/319 (99%), Positives = 319/319 (100%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR Sbjct: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ Sbjct: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 Query: 181 YVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVMHK+HPLAGQPLTLDSYC+ADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF Sbjct: 181 YVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGRIVASSELITVLPRHLVAATGMAE+LVVKELPFQTPEEHVDMLWHERDARNPAHKWL Sbjct: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLSATTHDEFGRINMKR 319 RAHLSATTHDEFGRINMKR Sbjct: 301 RAHLSATTHDEFGRINMKR 319 >ref|YP_004755067.1| transcriptional regulatory protein [Collimonas fungivorans Ter331] gb|AEK64244.1| Transcriptional regulatory protein [Collimonas fungivorans Ter331] Length = 321 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 241/316 (76%), Positives = 273/316 (86%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAA+ LAMTQPAVSNAL+RLRDTLND+L+IRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAASRLAMTQPAVSNALKRLRDTLNDELLIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT AEELWP VRRAL++LE I PE+FD+SRA TF+MAM DATAALWLP LVRTI R Sbjct: 61 KPTQHAEELWPVVRRALTDLETAITPETFDVSRAHTTFQMAMADATAALWLPGLVRTIER 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 DAP++ +RM+PLTTRDPR MLLRGD+DLAVGFFPGV AQLA GQ + S I H RLYTG+ Sbjct: 121 DAPQLNLRMVPLTTRDPRQMLLRGDVDLAVGFFPGVAAQLAGGQTTSASPIHHERLYTGE 180 Query: 181 YVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVMHKNHPLA Q LTLD+YC++ HLLVS SG+ H +ID+ LA M RER+ILLTVNQFF Sbjct: 181 YVCVMHKNHPLANQVLTLDNYCASHHLLVSFSGRAHGLIDETLAAMGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+L+TVLPRHL+ ATGM E LV +ELPF TP HVDMLWHERD+RNPAHKWL Sbjct: 241 TAGRVVASSDLLTVLPRHLIGATGMTEELVARELPFPTPAVHVDMLWHERDSRNPAHKWL 300 Query: 301 RAHLSATTHDEFGRIN 316 R HLS T H++F I+ Sbjct: 301 RGHLSETAHEKFSLID 316 >ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90833.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 319 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 241/319 (75%), Positives = 275/319 (86%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTL D+LVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT RAEELWP VRRALS+LEA + P++FD+SRA TFRMAM DATAALWLP LVR I + Sbjct: 61 KPTSRAEELWPVVRRALSDLEAAVTPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEK 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 DAP + +RM+PLTTR+PR MLLRGDIDLA+GFFPGV AQLA GQ A SQI H RLYTG+ Sbjct: 121 DAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGE 180 Query: 181 YVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVM KNHPLA LTLD+YC+A HLLVS SG+ ++D+ L + RER+ILLTVNQFF Sbjct: 181 YVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+LITVLPRHL+A+TGMAE+L+ K+LPF+ P+ HVDMLWHERDARNPAHKWL Sbjct: 241 TAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLSATTHDEFGRINMKR 319 R LSA+T + GR+ +R Sbjct: 301 REQLSASTEEGIGRVKKRR 319 >ref|YP_001101646.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL63525.1| putative transcriptional regulator, LysR family [Herminiimonas arsenicoxydans] Length = 319 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 237/319 (74%), Positives = 270/319 (84%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRD L D+LVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT RA ELWP VRRALS+LE + P++FD+SRA TFRMAM DATAALWLP LVR I + Sbjct: 61 KPTSRATELWPVVRRALSDLETAVTPDTFDVSRATTTFRMAMADATAALWLPFLVRAIEK 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQ 180 +AP + +RM+PLTTR+PR MLLRGDIDLA+GFFPGV AQLA GQ A SQI H RLYTG+ Sbjct: 121 EAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGE 180 Query: 181 YVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVM KNHPLA + LTLD+YC+A HLLVS SG+ ++DD L+ + RER+ILLTVNQFF Sbjct: 181 YVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+LITVLPRHL+A+TGM E+L+ K+LPF PE HVDMLWHERDARNPAHKWL Sbjct: 241 TAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLSATTHDEFGRINMKR 319 R L +T D GR+ +R Sbjct: 301 REQLITSTDDGIGRVKKRR 319 >ref|YP_002942074.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS16808.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 326 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 178/305 (58%), Positives = 223/305 (73%), Gaps = 1/305 (0%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 ++F TLDLNLLRVFD VM E+NLTRAA L++TQPAVSNALRRLR+ L D+LV R+ GV Sbjct: 3 VNFRTLDLNLLRVFDEVMAERNLTRAARNLSITQPAVSNALRRLREVLGDELVRRSGAGV 62 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 +PTPRA LWPTVR AL +L+ +AP FD S A TF +AM DATAA +P LV+ + + Sbjct: 63 EPTPRALALWPTVRDALRQLQHTLAPGEFDASTADTTFLLAMADATAAELIPGLVQIVEK 122 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQL-ADGQGMAKSQISHARLYTG 179 +AP I +R++PLTTRDPR ML + ++D+A+G+FP V A L A GQ RLY G Sbjct: 123 EAPAISLRVLPLTTRDPRRMLEQEEVDMAIGYFPAVIASLAARGQSGVGVAFETQRLYLG 182 Query: 180 QYVCVMHKNHPLAGQPLTLDSYCSADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQF 239 QYVCVM + HPLA PLTLD YC+A HLLVS SG+P+ ID L + RER+I++TVNQF Sbjct: 183 QYVCVMRRGHPLANAPLTLDDYCAARHLLVSFSGRPYGFIDQTLGALGRERRIVVTVNQF 242 Query: 240 FTAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKW 299 FTAGR+VA+S+L+TVLPRH V TG+ E LV+++LPF P HVD +WH R AH+W Sbjct: 243 FTAGRVVANSDLLTVLPRHFVTVTGIDEQLVLRDLPFDQPMVHVDAIWHRRAQHGHAHEW 302 Query: 300 LRAHL 304 LR L Sbjct: 303 LRTAL 307