BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0023.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspiril... 695 0.0 ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas ... 642 0.0 ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobac... 633 e-179 ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimon... 630 e-178 ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobactera... 596 e-168 >ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 364/368 (98%), Positives = 368/368 (100%) Query: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV Sbjct: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 Query: 61 GSGSESTATTVAARKLLDILRALPDSGEVSVSLSNKRLTVQSGKSRFALQTLAAEEFPTV 120 GSGSE+TATTVAARKLLDILRALPDSGEVS+SLSNKRLTVQSGKSRFALQTLAAEEFPTV Sbjct: 61 GSGSEATATTVAARKLLDILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPTV 120 Query: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA 180 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA Sbjct: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA 180 Query: 181 FCQVETEQDFPRQEVIIPRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKLVE 240 FCQVETE+DFPRQEVIIPRKTIIELQRLLDDSD+EVQLQIANNQVKLTFADIELISKLVE Sbjct: 181 FCQVETEEDFPRQEVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKLVE 240 Query: 241 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD 300 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD Sbjct: 241 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD 300 Query: 301 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK 360 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK Sbjct: 301 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK 360 Query: 361 YVVMPMRI 368 YVVMPMRI Sbjct: 361 YVVMPMRI 368 >ref|YP_004750664.1| DNA polymerase III subunit beta [Collimonas fungivorans Ter331] gb|AEK59841.1| DNA polymerase III beta subunit [Collimonas fungivorans Ter331] Length = 368 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 332/368 (90%), Positives = 355/368 (96%) Query: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 MQLVKT RDTLLRPLQIVSGIVERRHTLPILANILIRK+GEKVSFLSTDIEVQITT+A V Sbjct: 1 MQLVKTNRDTLLRPLQIVSGIVERRHTLPILANILIRKEGEKVSFLSTDIEVQITTNAKV 60 Query: 61 GSGSESTATTVAARKLLDILRALPDSGEVSVSLSNKRLTVQSGKSRFALQTLAAEEFPTV 120 GSGSE ATTVAARKLLDILRALPD+GEVS++LSNKR+TVQSGKSRFALQTLAAEEFPTV Sbjct: 61 GSGSEVAATTVAARKLLDILRALPDTGEVSLTLSNKRMTVQSGKSRFALQTLAAEEFPTV 120 Query: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA 180 AQA+HYNA V LPQKTLKHLFNMVHF+MAQQDIRYYLNGLLLV++GKNVIAVATDGHRLA Sbjct: 121 AQADHYNATVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVLDGKNVIAVATDGHRLA 180 Query: 181 FCQVETEQDFPRQEVIIPRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKLVE 240 FCQV TEQ+F RQEVIIPRKTIIELQRLL+++D+ VQL+IANNQVKL+FADIELISKLVE Sbjct: 181 FCQVATEQEFARQEVIIPRKTIIELQRLLEETDEPVQLEIANNQVKLSFADIELISKLVE 240 Query: 241 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD 300 GKFPDYTRVVPKGYKN FTISRDQLLRSLQRAAIMTSDKFKGVRWV+ PGSLKISSTNAD Sbjct: 241 GKFPDYTRVVPKGYKNDFTISRDQLLRSLQRAAIMTSDKFKGVRWVVTPGSLKISSTNAD 300 Query: 301 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK 360 QEEA+EELEIDYGGD+VDIGFNV+YLLDVLNNLK D VNIALGDANSSALIT+P+NADFK Sbjct: 301 QEEAIEELEIDYGGDSVDIGFNVTYLLDVLNNLKGDNVNIALGDANSSALITVPENADFK 360 Query: 361 YVVMPMRI 368 YVVMPMRI Sbjct: 361 YVVMPMRI 368 >ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille] gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille] Length = 368 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 324/368 (88%), Positives = 351/368 (95%) Query: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 MQLVKTQRD LLRPLQIVSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA V Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 61 GSGSESTATTVAARKLLDILRALPDSGEVSVSLSNKRLTVQSGKSRFALQTLAAEEFPTV 120 GSG++ +TTVAARKLLDILRALPDSG+VS++L+NKR+TVQSGKSRFALQTLAAEEFPTV Sbjct: 61 GSGNDVASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTV 120 Query: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA 180 AQAE YNA+V LPQKTLKHLFNMVHF+MAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLA Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLA 180 Query: 181 FCQVETEQDFPRQEVIIPRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKLVE 240 FCQV TEQ+FPRQEVIIPRKTIIELQRLL+++D V L+IANNQVKLTF DIELISKLVE Sbjct: 181 FCQVATEQEFPRQEVIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISKLVE 240 Query: 241 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD 300 GKFPDYTRVVPKGYKN+FTI RD LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNAD Sbjct: 241 GKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNAD 300 Query: 301 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK 360 QEEAVEE+EIDYGGD+VDIGFNV+YLLDVLNNLK D +NIALGDANSSALIT+PDN DFK Sbjct: 301 QEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKGDSINIALGDANSSALITVPDNPDFK 360 Query: 361 YVVMPMRI 368 YVVMPMRI Sbjct: 361 YVVMPMRI 368 >ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans] emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans] Length = 368 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 324/368 (88%), Positives = 350/368 (95%) Query: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 MQLVKTQRD LLRPLQIVSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA V Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 61 GSGSESTATTVAARKLLDILRALPDSGEVSVSLSNKRLTVQSGKSRFALQTLAAEEFPTV 120 GSG+E +TTVAARKLLDILRALPDSG+VS++L+NKR+TVQSGKSRFALQTLAAEEFPTV Sbjct: 61 GSGNEIASTTVAARKLLDILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTV 120 Query: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLA 180 AQAE YNA+V LPQKTLKHLFNMVHF+MAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLA Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLA 180 Query: 181 FCQVETEQDFPRQEVIIPRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKLVE 240 FCQV TEQ+F RQEVIIPRKTIIELQRLL+D+D V L+IAN+QVKLTF DIELISKLVE Sbjct: 181 FCQVATEQEFARQEVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVE 240 Query: 241 GKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNAD 300 GKFPDYTRVVPKGYKN+FTI RD LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNAD Sbjct: 241 GKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNAD 300 Query: 301 QEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFK 360 QEEAVEE+EIDYGGD+VDIGFNV+YLLDVLNNLK D +NIALGDANSSALIT+PDN DFK Sbjct: 301 QEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFK 360 Query: 361 YVVMPMRI 368 YVVMPMRI Sbjct: 361 YVVMPMRI 368 >ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 306/351 (87%), Positives = 334/351 (95%) Query: 18 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSGSESTATTVAARKLL 77 +SGIVERRHTLPILANILIRKDG+KVSFLSTDIEVQITTH V G E ATTVAARKLL Sbjct: 1 MSGIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLL 60 Query: 78 DILRALPDSGEVSVSLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVNLPQKTL 137 DILRALP+SG+VS++L+NKR+TVQSGKSRFALQTLAAEEFPTV QAEHY+AQ++LPQKTL Sbjct: 61 DILRALPESGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTL 120 Query: 138 KHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVETEQDFPRQEVII 197 KHLFNMVHF+MAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQVETEQ+F RQEVII Sbjct: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVETEQEFTRQEVII 180 Query: 198 PRKTIIELQRLLDDSDDEVQLQIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNS 257 PRKTIIELQRLL+D+D+ VQ+ IA NQVKLTFADIELISKLVEGKFPDYTRVVPKGYKN+ Sbjct: 181 PRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 Query: 258 FTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDTV 317 FT+ RDQLLRSLQRAAIMTSDKFKGVR ++ PGS+K+SSTNADQEE+VEE+EIDYGGD+V Sbjct: 241 FTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDYGGDSV 300 Query: 318 DIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFKYVVMPMRI 368 DIGFNV+YLLDVLNNLK D VNIALGDANSSALITIPDNADFKYVVMPMRI Sbjct: 301 DIGFNVTYLLDVLNNLKCDQVNIALGDANSSALITIPDNADFKYVVMPMRI 351