BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0022.p (406 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATP... 488 e-136 ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seroped... 488 e-135 ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans... 458 e-127 ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. ... 452 e-125 ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenico... 430 e-118 >emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity, protein [Herbaspirillum seropedicae] Length = 832 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 241/251 (96%), Positives = 244/251 (97%), Gaps = 1/251 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S +PADNT QQ+ YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 STSPADNTNSAQQS-YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 184 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 185 IKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 IKV+GESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 DFAFEGGTPPF 255 DFAFEGGT F Sbjct: 241 DFAFEGGTRGF 251 >ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 241/251 (96%), Positives = 244/251 (97%), Gaps = 1/251 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S +PADNT QQ+ YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 STSPADNTNSAQQS-YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 184 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 185 IKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 IKV+GESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 DFAFEGGTPPF 255 DFAFEGGT F Sbjct: 241 DFAFEGGTRGF 251 >ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] Length = 826 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 221/251 (88%), Positives = 235/251 (93%), Gaps = 1/251 (0%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S AP DNT QPQ N YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 2 SSAP-DNTNQPQPNAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 65 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 E+LAG+C+EIHVTIHADNSISITDNGRG+PTG+K DDKH+PKRSAAEIVMTELHAGGKFD Sbjct: 61 ESLAGHCTEIHVTIHADNSISITDNGRGVPTGIKFDDKHDPKRSAAEIVMTELHAGGKFD 120 Query: 125 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 184 QNSYKVSGGLHGVGVSCVN LSK LKLTIRRDGKVH MEF +G+ QNRE E +DG+ VSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKVHYMEFVRGVPQNRETETIDGMLVSP 180 Query: 185 IKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 IKV+G++DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 245 DFAFEGGTPPF 255 +FAFEGGT F Sbjct: 241 NFAFEGGTRGF 251 >ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 217/251 (86%), Positives = 232/251 (92%) Query: 5 SQAPADNTVQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 64 S P DN QPQ QYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLDNSID Sbjct: 2 SAIPNDNAPQPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSID 61 Query: 65 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 124 E+LAG+C+EIHVTIH+DNSISITDNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 62 ESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFD 121 Query: 125 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 184 QNSYKVSGGLHGVGVSCVN LSK LKLTIRRDGK H MEF +G+ QNRE+E +DG+ VSP Sbjct: 122 QNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSP 181 Query: 185 IKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 244 IKVVG++DKRGTEVHFWADEEIFT+VEFHY+ILAKRIRELSFLNNGVHIKL+DQRTGKEE Sbjct: 182 IKVVGDTDKRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKEE 241 Query: 245 DFAFEGGTPPF 255 DFAFEGGT F Sbjct: 242 DFAFEGGTRGF 252 >ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Length = 835 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 3/254 (1%) Query: 5 SQAPADNTVQPQQN---QYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDN 61 S P DNT Q YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLDN Sbjct: 2 SAIPNDNTPQSPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDN 61 Query: 62 SIDEALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGG 121 SIDE+LAG+C+EIHVTIH+DNSISITDNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGG Sbjct: 62 SIDESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGG 121 Query: 122 KFDQNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQ 181 KFDQNSYKVSGGLHGVGVSCVN LS+ LKLTIRRDGK H MEF +G+ QNRE+E +DG Sbjct: 122 KFDQNSYKVSGGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGHI 181 Query: 182 VSPIKVVGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTG 241 VSPIKV+GE+DKRGTEVHFWADEEIF +VEFHY+ILAKRIRELSFLNNGV I+L+DQRTG Sbjct: 182 VSPIKVIGETDKRGTEVHFWADEEIFNNVEFHYDILAKRIRELSFLNNGVRIRLSDQRTG 241 Query: 242 KEEDFAFEGGTPPF 255 KEE FAFEGGT F Sbjct: 242 KEELFAFEGGTRGF 255