BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0021.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporte... 492 e-137 ref|YP_004474468.1| binding-protein-dependent transport systems ... 398 e-109 ref|YP_004380522.1| ABC transporter permease [Pseudomonas mendoc... 397 e-108 ref|YP_004351350.1| ABC transporter permease [Pseudomonas brassi... 384 e-104 ref|YP_345873.1| binding-protein dependent transport system inne... 382 e-104 >ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61585.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 278/288 (96%), Positives = 286/288 (99%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M QTPPIRDEYE+PLTPLPGLVLQRQFSLPQR+WQQGWVRKGAILLLLAL+WEGVARWQN Sbjct: 1 MAQTPPIRDEYEIPLTPLPGLVLQRQFSLPQRLWQQGWVRKGAILLLLALVWEGVARWQN 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP+FLQTAQAFIDGL++GELFGKTWLSLQVLLKAY+LGIVAAF LTTLAVSTQFGR Sbjct: 61 NDLLLPSFLQTAQAFIDGLRSGELFGKTWLSLQVLLKAYVLGIVAAFALTTLAVSTQFGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLLGTLTSMFNPLPAIALLPIALLWFGLG+GSLIFVLVHSVLWALAVNTYAGFLGVSDTL Sbjct: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW Sbjct: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 >ref|YP_004474468.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] gb|AEF22374.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] Length = 288 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 224/288 (77%), Positives = 257/288 (89%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M +P R+EYE+PL PLPGL L+R+ SL QR+WQQGW+RK ILL LALIWE AR+Q Sbjct: 1 MSLSPARREEYEIPLQPLPGLKLERELSLGQRLWQQGWLRKSLILLALALIWEAAARYQA 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP+FLQTA+AF++G+ +GEL K +SL VL+K YL+GIV AF+LT+LAVSTQ GR Sbjct: 61 NDLLLPSFLQTARAFVEGIGSGELLEKVAISLSVLVKGYLIGIVLAFLLTSLAVSTQLGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLL TLTSMFNPLPAIALLP++LLWFGLGE SLIFVLVHSVLWALA+NTYAGFLGVS+T Sbjct: 121 DLLSTLTSMFNPLPAIALLPLSLLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSETQ 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGL+GL FVL +L+PAALPSIL+GL+IGWAFAWRTLIAAELVFGA+SGKGGLGW Sbjct: 181 RMAGRNYGLKGLRFVLFILIPAALPSILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGL VILIGLLVENL+F ++ERVTVK+WGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLVAVILIGLLVENLIFASIERVTVKRWGMQR 288 >ref|YP_004380522.1| ABC transporter permease [Pseudomonas mendocina NK-01] gb|AEB58770.1| ABC transporter, permease protein [Pseudomonas mendocina NK-01] Length = 288 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 224/288 (77%), Positives = 254/288 (88%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M +P RD+YE+ L PLP L L+R+ L QR+WQQ W+RK ILL+LALIWE AR+Q Sbjct: 1 MSLSPARRDDYEIALQPLPDLKLERELPLLQRLWQQSWLRKTLILLVLALIWELAARYQG 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP+F+QTA+AF++G+ +GEL K +SL VL+K YLLGI AF+LTTLAVSTQ GR Sbjct: 61 NDLLLPSFVQTAKAFVEGIGSGELLEKVAISLSVLVKGYLLGIGLAFLLTTLAVSTQLGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLL TLTSMFNPLPAIALLP++LLWFGLGE SLIFVLVHSVLWALA+NTYAGFLGVS+T Sbjct: 121 DLLSTLTSMFNPLPAIALLPLSLLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSETQ 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGLRGL FVL +L+PAALPSIL+GL+IGWAFAWRTLIAAELVFGA+SGKGGLGW Sbjct: 181 RMAGRNYGLRGLRFVLFILIPAALPSILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGLA VILIGLLVENLVF T+ERVTVK+WGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAAVILIGLLVENLVFATVERVTVKRWGMQR 288 >ref|YP_004351350.1| ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66346.1| Putative ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 288 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 234/288 (81%), Positives = 259/288 (89%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M Q P R+EYE+ L PL + L+R+ L QR+WQQGW+RK ILLLLAL+WEGVAR+QN Sbjct: 1 MSQLSPAREEYEVDLQPLTHVPLERELPLGQRLWQQGWLRKSLILLLLALVWEGVARYQN 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP+FLQTA A DGL +GEL GK W+SL VLLK YLLGIV AF LTTLAVSTQFGR Sbjct: 61 NDLLLPSFLQTASALYDGLLSGELLGKVWISLVVLLKGYLLGIVLAFGLTTLAVSTQFGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLL TLTSMFNPLPAIALLP+ALLWFGLG+ SLIFVLVHSVLWALA+N Y+GFLGVS+TL Sbjct: 121 DLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNMYSGFLGVSETL 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGL+GL FVL +L+PAALPSILAGL+IGWAFAWRTLIAAELVFGATSGKGGLGW Sbjct: 181 RMAGRNYGLKGLRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGLA+VILIGLLVENLVF++LERVTVK+WGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDSLERVTVKRWGMQR 288 >ref|YP_345873.1| binding-protein dependent transport system inner membrane protein [Pseudomonas fluorescens Pf0-1] gb|ABA71884.1| putative ABC transport system, permease [Pseudomonas fluorescens Pf0-1] Length = 288 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 225/288 (78%), Positives = 255/288 (88%) Query: 1 MPQTPPIRDEYELPLTPLPGLVLQRQFSLPQRIWQQGWVRKGAILLLLALIWEGVARWQN 60 M + +R E+E L PL + ++R+ L QR+WQQGW+RK IL+LLA++WE VAR QN Sbjct: 1 MSHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQN 60 Query: 61 NDLLLPTFLQTAQAFIDGLKTGELFGKTWLSLQVLLKAYLLGIVAAFVLTTLAVSTQFGR 120 NDLLLP+FLQT+ A DGL +GEL GK W+SL VL+K YL+GIV AF LTTLAVSTQ GR Sbjct: 61 NDLLLPSFLQTSHALYDGLLSGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGR 120 Query: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGEGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 DLL TLTSMFNPLPAIALLP+ALLWFGLG+ SLIFVLVHSVLWALA+NTYAGFLGVS+TL Sbjct: 121 DLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETL 180 Query: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 RMAGRNYGL+G+ FVL +L+PAALPSILAGL+IGWAFAWRTLIAAELVFGATSGKGGLGW Sbjct: 181 RMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 YIFQNRNELYTDKVFAGLA+VILIGLLVENLVF+TLERVTVK+WGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR 288