BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0010.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporte...   240   7e-62
gb|EGH62321.1| ABC transporter ATP-binding protein [Pseudomonas ...   220   5e-56
ref|NP_794928.1| ABC transporter ATP-binding protein [Pseudomona...   219   1e-55
gb|EGH77178.1| ABC transporter ATP-binding protein [Pseudomonas ...   219   1e-55
gb|EGH31419.1| ABC transporter ATP-binding protein [Pseudomonas ...   219   1e-55

>ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ61586.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  240 bits (612), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 127/133 (95%), Positives = 129/133 (96%)

Query: 1   MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 60
           MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA
Sbjct: 158 MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 217

Query: 61  LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGETSAASTA 120
           LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGG + AAS A
Sbjct: 218 LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGPSDAASAA 277

Query: 121 APVINFSDVRFSY 133
           AP +NFSDVRFSY
Sbjct: 278 APTLNFSDVRFSY 290


>gb|EGH62321.1| ABC transporter ATP-binding protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 286

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 115/133 (86%), Positives = 119/133 (89%), Gaps = 4/133 (3%)

Query: 1   MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 60
           MKARVAIARALAMQPK+LLMDEPFAALDALTRRKMQEELL LWDEVRFTLLFVTHSIEEA
Sbjct: 158 MKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLELWDEVRFTLLFVTHSIEEA 217

Query: 61  LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGETSAASTA 120
           LVVGNRILLLSPHPGRVRAEINSHQYDL SLGGVGFQQTAQRIHRLLFDEG     A T 
Sbjct: 218 LVVGNRILLLSPHPGRVRAEINSHQYDLKSLGGVGFQQTAQRIHRLLFDEGD----AETV 273

Query: 121 APVINFSDVRFSY 133
              +NF D+R +Y
Sbjct: 274 EQELNFQDIRIAY 286


>ref|NP_794928.1| ABC transporter ATP-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gb|AAO58623.1| ABC transporter, ATP-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 286

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 114/133 (85%), Positives = 118/133 (88%), Gaps = 4/133 (3%)

Query: 1   MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 60
           MKARVAIARALAMQPK+LLMDEPFAALDALTRRKMQEELL LWDEVRFTLLFVTHSIEEA
Sbjct: 158 MKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLELWDEVRFTLLFVTHSIEEA 217

Query: 61  LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGETSAASTA 120
           LVVGNRILLLSPHPGRVRAEINSHQYDL SLGGVGFQQTAQRIHRLLFDEG       T 
Sbjct: 218 LVVGNRILLLSPHPGRVRAEINSHQYDLKSLGGVGFQQTAQRIHRLLFDEG----ETGTV 273

Query: 121 APVINFSDVRFSY 133
              +NF D+R +Y
Sbjct: 274 EQELNFQDIRIAY 286


>gb|EGH77178.1| ABC transporter ATP-binding protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 293

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 116/136 (85%), Positives = 120/136 (88%), Gaps = 10/136 (7%)

Query: 1   MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 60
           MKARVAIARALAMQPK+LLMDEPFAALDALTRRKMQEELL LWDEVRFTLLFVTHSIEEA
Sbjct: 165 MKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLELWDEVRFTLLFVTHSIEEA 224

Query: 61  LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGETSAASTA 120
           LVVGNRILLLSPHPGRVRAEINSHQYDL SLGGVGFQQTAQRIHRLLFDEG        A
Sbjct: 225 LVVGNRILLLSPHPGRVRAEINSHQYDLKSLGGVGFQQTAQRIHRLLFDEG-------EA 277

Query: 121 APV---INFSDVRFSY 133
            PV   +NF D+R +Y
Sbjct: 278 GPVEQDLNFQDIRIAY 293


>gb|EGH31419.1| ABC transporter ATP-binding protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 293

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 116/136 (85%), Positives = 120/136 (88%), Gaps = 10/136 (7%)

Query: 1   MKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEA 60
           MKARVAIARALAMQPK+LLMDEPFAALDALTRRKMQEELL LWDEVRFTLLFVTHSIEEA
Sbjct: 165 MKARVAIARALAMQPKILLMDEPFAALDALTRRKMQEELLELWDEVRFTLLFVTHSIEEA 224

Query: 61  LVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQRIHRLLFDEGGETSAASTA 120
           LVVGNRILLLSPHPGRVRAEINSHQYDL SLGGVGFQQTAQRIHRLLFDEG        A
Sbjct: 225 LVVGNRILLLSPHPGRVRAEINSHQYDLKSLGGVGFQQTAQRIHRLLFDEG-------EA 277

Query: 121 APV---INFSDVRFSY 133
            PV   +NF D+R +Y
Sbjct: 278 GPVEQDLNFQDIRIAY 293