BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0256.p         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04578149.1| 50S ribosomal subunit protein A [Oxalobacter ...   119   2e-25
ref|ZP_04575952.1| LSU ribosomal protein L35P [Oxalobacter formi...   119   2e-25
ref|ZP_03542301.1| ribosomal protein L35 [Comamonas testosteroni...   100   1e-19
ref|YP_986635.1| 50S ribosomal protein L35 [Acidovorax sp. JS42]...   100   1e-19
ref|YP_004752157.1| 50S ribosomal subunit protein A [Collimonas ...    97   9e-19

>ref|ZP_04578149.1| 50S ribosomal subunit protein A [Oxalobacter formigenes OXCC13]
 gb|EEO29122.1| 50S ribosomal subunit protein A [Oxalobacter formigenes OXCC13]
          Length = 73

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 61/65 (93%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRFRVRPGGT+KCG AFKRHILTKKTTK KRQLRG TNVNA+DV SV+R
Sbjct: 9  MPKMKTKSSAKKRFRVRPGGTVKCGQAFKRHILTKKTTKAKRQLRGATNVNASDVSSVLR 68

Query: 61 MMPNA 65
          MMP+A
Sbjct: 69 MMPSA 73


>ref|ZP_04575952.1| LSU ribosomal protein L35P [Oxalobacter formigenes HOxBLS]
 gb|EEO26914.1| LSU ribosomal protein L35P [Oxalobacter formigenes HOxBLS]
          Length = 65

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 62/65 (95%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRFRVRPGGT+KC  AFKRHILTKKTTKVKRQLRG+TNVNA+DV SV+R
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKCAQAFKRHILTKKTTKVKRQLRGMTNVNASDVSSVLR 60

Query: 61 MMPNA 65
          MMP+A
Sbjct: 61 MMPSA 65


>ref|ZP_03542301.1| ribosomal protein L35 [Comamonas testosteroni KF-1]
 ref|YP_003279071.1| 50S ribosomal protein L35 [Comamonas testosteroni CNB-2]
 ref|ZP_07046934.1| 50S ribosomal protein L35 [Comamonas testosteroni S44]
 gb|EED66587.1| ribosomal protein L35 [Comamonas testosteroni KF-1]
 gb|ACY33775.1| ribosomal protein L35 [Comamonas testosteroni CNB-2]
 gb|EFI59445.1| 50S ribosomal protein L35 [Comamonas testosteroni S44]
          Length = 67

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 57/65 (87%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRFRVRPGGT+K G AFKRHILTKKTTK KR LRGI NV++ D+ S+ +
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHSGDMGSIAK 60

Query: 61 MMPNA 65
          M+P+A
Sbjct: 61 MLPSA 65


>ref|YP_986635.1| 50S ribosomal protein L35 [Acidovorax sp. JS42]
 ref|YP_002552912.1| 50S ribosomal protein l35 [Acidovorax ebreus TPSY]
 sp|A1W8I4.1|RL35_ACISJ RecName: Full=50S ribosomal protein L35
 sp|B9MHY0.1|RL35_DIAST RecName: Full=50S ribosomal protein L35
 gb|ABM42559.1| LSU ribosomal protein L35P [Acidovorax sp. JS42]
 gb|ACM32912.1| ribosomal protein L35 [Acidovorax ebreus TPSY]
          Length = 67

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 56/65 (86%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRFRVRPGGT+K G AFKRHILTKKTTK KR LRGI NV+  D+ S+ +
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRHLRGIVNVHEGDMGSIAK 60

Query: 61 MMPNA 65
          M+P+A
Sbjct: 61 MLPSA 65


>ref|YP_004752157.1| 50S ribosomal subunit protein A [Collimonas fungivorans Ter331]
 gb|AEK61334.1| 50S ribosomal subunit protein A [Collimonas fungivorans Ter331]
          Length = 65

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRFRVRPGGT+K G AFKRHILTKKTTK KRQLRG   V+  ++ SV R
Sbjct: 1  MPKMKTKSSAKKRFRVRPGGTVKRGQAFKRHILTKKTTKNKRQLRGSVGVHETNMASVSR 60

Query: 61 MMPNA 65
          M+P A
Sbjct: 61 MLPTA 65