BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0254.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775387.1| translation initiation factor protein [Herba...   270   4e-71
ref|YP_001353178.1| translation initiation factor IF-3 [Janthino...   266   9e-70
ref|YP_001100080.1| protein chain initiation factor IF-3 [Hermin...   265   1e-69
emb|CAL61955.2| Translation initiation factor IF-3 [Herminiimona...   265   1e-69
ref|ZP_08273746.1| Translation initiation factor 3 [Oxalobactera...   262   1e-68

>ref|YP_003775387.1| translation initiation factor protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63479.1| translation initiation factor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 156

 Score =  270 bits (691), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/141 (93%), Positives = 137/141 (97%)

Query: 1   LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 60
           LAEA RL+EEA VDLVEIAPTAQPPV RLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF
Sbjct: 16  LAEALRLSEEAEVDLVEIAPTAQPPVCRLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 75

Query: 61  RPGTDDGDYNIKVRNLTKFLEEGDKTKITLRFRGREMAHQEIGMRVLERLKVDLEPFGQV 120
           RPGTDDGDYNIK+RNLTKFLE+GDKTKITLRFRGREMAHQEIGMR+LERLK DLEP+GQV
Sbjct: 76  RPGTDDGDYNIKLRNLTKFLEDGDKTKITLRFRGREMAHQEIGMRMLERLKADLEPYGQV 135

Query: 121 EQFPKMEGRQMIMVLAPKKKK 141
           EQFPKMEGRQMIMVLAPKKKK
Sbjct: 136 EQFPKMEGRQMIMVLAPKKKK 156


>ref|YP_001353178.1| translation initiation factor IF-3 [Janthinobacterium sp.
           Marseille]
 gb|ABR88531.1| translation initiation factor IF-3 [Janthinobacterium sp.
           Marseille]
          Length = 154

 Score =  266 bits (679), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 138/141 (97%)

Query: 1   LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 60
           LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQK+I VKEVKF
Sbjct: 14  LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKIILVKEVKF 73

Query: 61  RPGTDDGDYNIKVRNLTKFLEEGDKTKITLRFRGREMAHQEIGMRVLERLKVDLEPFGQV 120
           RPGTDDGDYNIK+RNL KFLE+GDKTKITLRFRGREMAHQ+IG+R+LERLK DLEP+GQV
Sbjct: 74  RPGTDDGDYNIKLRNLIKFLEDGDKTKITLRFRGREMAHQDIGVRMLERLKQDLEPYGQV 133

Query: 121 EQFPKMEGRQMIMVLAPKKKK 141
           EQ+PKMEGRQMIMVL+PKKKK
Sbjct: 134 EQWPKMEGRQMIMVLSPKKKK 154


>ref|YP_001100080.1| protein chain initiation factor IF-3 [Herminiimonas arsenicoxydans]
          Length = 154

 Score =  265 bits (678), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 137/141 (97%)

Query: 1   LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 60
           LA+AFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVI +KEVKF
Sbjct: 14  LADAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVILIKEVKF 73

Query: 61  RPGTDDGDYNIKVRNLTKFLEEGDKTKITLRFRGREMAHQEIGMRVLERLKVDLEPFGQV 120
           RPGTDDGDYNIK+RNL KFL++GDKTKITLRFRGREMAHQ+IG R+LERLK DLEP+GQV
Sbjct: 74  RPGTDDGDYNIKLRNLIKFLDDGDKTKITLRFRGREMAHQDIGFRMLERLKADLEPYGQV 133

Query: 121 EQFPKMEGRQMIMVLAPKKKK 141
           EQFPKMEGRQMIMVL+PKKKK
Sbjct: 134 EQFPKMEGRQMIMVLSPKKKK 154


>emb|CAL61955.2| Translation initiation factor IF-3 [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  265 bits (678), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 137/141 (97%)

Query: 1   LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 60
           LA+AFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVI +KEVKF
Sbjct: 16  LADAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVILIKEVKF 75

Query: 61  RPGTDDGDYNIKVRNLTKFLEEGDKTKITLRFRGREMAHQEIGMRVLERLKVDLEPFGQV 120
           RPGTDDGDYNIK+RNL KFL++GDKTKITLRFRGREMAHQ+IG R+LERLK DLEP+GQV
Sbjct: 76  RPGTDDGDYNIKLRNLIKFLDDGDKTKITLRFRGREMAHQDIGFRMLERLKADLEPYGQV 135

Query: 121 EQFPKMEGRQMIMVLAPKKKK 141
           EQFPKMEGRQMIMVL+PKKKK
Sbjct: 136 EQFPKMEGRQMIMVLSPKKKK 156


>ref|ZP_08273746.1| Translation initiation factor 3 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32783.1| Translation initiation factor 3 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 154

 Score =  262 bits (670), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 138/141 (97%)

Query: 1   LAEAFRLAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKKAHEAKLKQKVIQVKEVKF 60
           LAEAFR+AEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQK+AHEAKL+QK+I VKEVKF
Sbjct: 14  LAEAFRMAEEANVDLVEIAPTAQPPVARLMDYGKFKYQEQKRAHEAKLRQKIILVKEVKF 73

Query: 61  RPGTDDGDYNIKVRNLTKFLEEGDKTKITLRFRGREMAHQEIGMRVLERLKVDLEPFGQV 120
           RPGTDDGDY IK+RNL KFL+EGDKTKITLRFRGREMAHQ+IG+R+LERLK+DLEP+GQV
Sbjct: 74  RPGTDDGDYGIKLRNLIKFLDEGDKTKITLRFRGREMAHQDIGVRMLERLKLDLEPYGQV 133

Query: 121 EQFPKMEGRQMIMVLAPKKKK 141
           EQ+PKMEGRQMIMVLAPKKKK
Sbjct: 134 EQWPKMEGRQMIMVLAPKKKK 154