BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0235.p         (219 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004681914.1| transcriptional regulator [Cupriavidus necat...   161   6e-38
ref|YP_841295.1| outer membrane protein [Ralstonia eutropha H16]...   160   1e-37
ref|YP_294462.1| RND efflux system, outer membrane lipoprotein, ...   154   1e-35
ref|YP_586780.1| RND efflux system outer membrane lipoprotein [C...   144   1e-32
ref|YP_004360010.1| RND efflux system, outer membrane lipoprotei...   134   1e-29

>ref|YP_004681914.1| transcriptional regulator [Cupriavidus necator N-1]
 gb|AEI80682.1| outer membrane protein [Cupriavidus necator N-1]
          Length = 492

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 91/111 (81%)

Query: 2   AEYYPKLSLSALLGFESLGAAGLVSADSFQPQAALGLRWRLFDFGRIDAEVARAKGVNRE 61
           AEYYPKLSLSALLGFESL A  L +A +FQP A  GLRWRLFDFGR+DAEVA+AKG N E
Sbjct: 336 AEYYPKLSLSALLGFESLSAGKLFTASAFQPAAIAGLRWRLFDFGRVDAEVAQAKGANAE 395

Query: 62  ALARYRQSILRATEDVENAIVTLVQLEKQSAELADEVAARQRARSAAQDAY 112
           ALA YR+++LRATEDVENAI+TL QLE Q  EL  EVAA  R+R AA+DAY
Sbjct: 396 ALATYRKAMLRATEDVENAIITLTQLELQGKELTVEVAAHARSRGAAEDAY 446


>ref|YP_841295.1| outer membrane protein [Ralstonia eutropha H16]
 emb|CAJ96565.1| outer membrane protein [Ralstonia eutropha H16]
          Length = 492

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 90/111 (81%)

Query: 2   AEYYPKLSLSALLGFESLGAAGLVSADSFQPQAALGLRWRLFDFGRIDAEVARAKGVNRE 61
           AEYYPKLSLSALLGFESL A  L +  +FQP A  GLRWRLFDFGR+DAEVA+AKG N E
Sbjct: 336 AEYYPKLSLSALLGFESLSAGKLFTGSAFQPAAIAGLRWRLFDFGRVDAEVAQAKGANAE 395

Query: 62  ALARYRQSILRATEDVENAIVTLVQLEKQSAELADEVAARQRARSAAQDAY 112
           ALA YR+++LRATEDVENAI+TL QLE Q  EL  EVAA  R+R AA+DAY
Sbjct: 396 ALATYRKAMLRATEDVENAIITLTQLELQGKELTVEVAAHARSRGAAEDAY 446


>ref|YP_294462.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia
           eutropha JMP134]
 gb|AAZ59618.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia
           eutropha JMP134]
          Length = 488

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 93/111 (83%)

Query: 2   AEYYPKLSLSALLGFESLGAAGLVSADSFQPQAALGLRWRLFDFGRIDAEVARAKGVNRE 61
           AEYYPKLSL+ALLGFESL A+ + +A +FQP A  GLRWRLFDFGR+DAEVA+A+G N E
Sbjct: 332 AEYYPKLSLAALLGFESLSASKMFTAATFQPAAMAGLRWRLFDFGRVDAEVAQARGANAE 391

Query: 62  ALARYRQSILRATEDVENAIVTLVQLEKQSAELADEVAARQRARSAAQDAY 112
           ALA YR+S+LRATEDVENAIVTL QL+ QS +L  EV A+ R+R AA++AY
Sbjct: 392 ALATYRKSMLRATEDVENAIVTLTQLQLQSQDLTVEVDAQARSRGAAEEAY 442


>ref|YP_586780.1| RND efflux system outer membrane lipoprotein [Cupriavidus
           metallidurans CH34]
 gb|ABF11511.1| RND efflux system, outer membrane lipoprotein [Cupriavidus
           metallidurans CH34]
          Length = 495

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 95/111 (85%)

Query: 2   AEYYPKLSLSALLGFESLGAAGLVSADSFQPQAALGLRWRLFDFGRIDAEVARAKGVNRE 61
           AEYYPK+SLSALLGFESL A  L +A +FQP AA GLRWRLFDFGR++AEVA+AKG N E
Sbjct: 338 AEYYPKVSLSALLGFESLSAGKLFTAQAFQPAAAAGLRWRLFDFGRVNAEVAQAKGANAE 397

Query: 62  ALARYRQSILRATEDVENAIVTLVQLEKQSAELADEVAARQRARSAAQDAY 112
           ALA YR+S+L+ATEDVENA+++L QLE Q+ ELA E+ A +RAR+A++DAY
Sbjct: 398 ALASYRKSMLQATEDVENALISLAQLESQNRELAVEIRAHERARNASEDAY 448


>ref|YP_004360010.1| RND efflux system, outer membrane lipoprotein, NodT family
           [Burkholderia gladioli BSR3]
 gb|AEA60054.1| RND efflux system, outer membrane lipoprotein, NodT family
           [Burkholderia gladioli BSR3]
          Length = 549

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 84/114 (73%)

Query: 1   LAEYYPKLSLSALLGFESLGAAGLVSADSFQPQAALGLRWRLFDFGRIDAEVARAKGVNR 60
           L++YYPKLS+S LLGF+S+ A  L +A +FQP    GLRWRLFDFG++DAEVA A+G N 
Sbjct: 350 LSDYYPKLSISGLLGFDSISAGQLFTARAFQPGVTAGLRWRLFDFGKVDAEVASARGANA 409

Query: 61  EALARYRQSILRATEDVENAIVTLVQLEKQSAELADEVAARQRARSAAQDAYXA 114
           EALA YRQ++L+A EDVENA V L Q + + AEL  EV +  RAR  ++ AY A
Sbjct: 410 EALASYRQTVLKAAEDVENAFVALSQTQLRQAELDAEVKSLTRARDLSERAYKA 463