BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0212.p         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778022.1| methylmalonate-semialdehyde dehydrogenase [H...   374   e-102
ref|YP_001887998.1| methylmalonate-semialdehyde dehydrogenase [B...   327   6e-88
ref|YP_728089.1| methylmalonate-semialdehyde dehydrogenase [Rals...   310   6e-83
ref|YP_724792.1| methylmalonate-semialdehyde dehydrogenase [Rals...   309   1e-82
ref|YP_002007100.1| methylmalonate-semialdehyde dehydrogenase / ...   309   1e-82

>ref|YP_003778022.1| methylmalonate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ66114.1| methylmalonate-semialdehyde dehydrogenase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 497

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/201 (89%), Positives = 190/201 (94%)

Query: 1   LVSALAERTRNLKINDGMEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVP 60
           LV+ALAER R LKIN+GM   AEMGPVVTAAAK RIEGLIG+GVEEGATLVVDGRG++VP
Sbjct: 297 LVAALAERARKLKINEGMAAGAEMGPVVTAAAKERIEGLIGRGVEEGATLVVDGRGYQVP 356

Query: 61  GRENGFFVGGTLFDHVTPEMTIYKEEIFGPVLCVVRAPDVATAVELINNHEYGNGVAVFT 120
           G E GFFVGGTL DHVTPEMT+YKEEIFGPVLCV+R PD+A+AVELIN HEYGNGVAV+T
Sbjct: 357 GFEKGFFVGGTLLDHVTPEMTVYKEEIFGPVLCVLRCPDIASAVELINAHEYGNGVAVYT 416

Query: 121 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHVYGPEGVRFYTRAKA 180
           RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHH+YGPEGVRFYTRAKA
Sbjct: 417 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHMYGPEGVRFYTRAKA 476

Query: 181 VMQRWPNTASAGAEFAFPQMK 201
           VMQRWPNTASAGAEFAFPQMK
Sbjct: 477 VMQRWPNTASAGAEFAFPQMK 497


>ref|YP_001887998.1| methylmalonate-semialdehyde dehydrogenase [Burkholderia
           phytofirmans PsJN]
 gb|ACD18628.1| methylmalonate-semialdehyde dehydrogenase [Burkholderia
           phytofirmans PsJN]
          Length = 501

 Score =  327 bits (838), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/199 (82%), Positives = 183/199 (91%)

Query: 1   LVSALAERTRNLKINDGMEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVP 60
           LV+ALAERTR LKI+DG    AEMGPV+TAAA+ RIE LIG GV +GATLVVDGR ++VP
Sbjct: 301 LVAALAERTRALKIDDGTAPGAEMGPVITAAARERIESLIGAGVADGATLVVDGRDYRVP 360

Query: 61  GRENGFFVGGTLFDHVTPEMTIYKEEIFGPVLCVVRAPDVATAVELINNHEYGNGVAVFT 120
           GRE+GFFVGGTLFDHVTPEMT+Y+EEIFGPVLCVVR P+VA AVELIN HEYGNGVAVFT
Sbjct: 361 GRESGFFVGGTLFDHVTPEMTVYREEIFGPVLCVVRVPNVAAAVELINAHEYGNGVAVFT 420

Query: 121 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHVYGPEGVRFYTRAKA 180
           RDGGVAREF RQ+++GMVGVNVP+PVPMAF+SFGGWKRSLFGDHH+YGPEGVRFYTR KA
Sbjct: 421 RDGGVAREFTRQVQIGMVGVNVPVPVPMAFNSFGGWKRSLFGDHHIYGPEGVRFYTRHKA 480

Query: 181 VMQRWPNTASAGAEFAFPQ 199
           VMQRWP+T +AGAEFAFPQ
Sbjct: 481 VMQRWPDTITAGAEFAFPQ 499


>ref|YP_728089.1| methylmalonate-semialdehyde dehydrogenase [Ralstonia eutropha H16]
 emb|CAJ94721.1| Methylmalonate-semialdehyde dehydrogenase [Ralstonia eutropha H16]
          Length = 508

 Score =  310 bits (795), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 146/201 (72%), Positives = 166/201 (82%)

Query: 1   LVSALAERTRNLKINDGMEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVP 60
           LV  LAER  +LKI +GME DAEMGP+VTAA KA++EG I KGVEEGATLV DGRG  VP
Sbjct: 308 LVPRLAERASSLKIRNGMESDAEMGPLVTAAHKAKVEGYIAKGVEEGATLVTDGRGHTVP 367

Query: 61  GRENGFFVGGTLFDHVTPEMTIYKEEIFGPVLCVVRAPDVATAVELINNHEYGNGVAVFT 120
           G ENGF+VGGTLFDHV P+MTIYKEEIFGPVL VVR  D A AV LIN HE+GNGV+ +T
Sbjct: 368 GHENGFYVGGTLFDHVKPDMTIYKEEIFGPVLSVVRVHDFAEAVALINAHEFGNGVSCYT 427

Query: 121 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHVYGPEGVRFYTRAKA 180
            DGG+AR F RQI++GMVG+NVP+PVPMA+ SFGGWKRSLFGDHH YG EGVRFYTR K+
Sbjct: 428 SDGGIARAFARQIQIGMVGINVPIPVPMAWHSFGGWKRSLFGDHHAYGEEGVRFYTRYKS 487

Query: 181 VMQRWPNTASAGAEFAFPQMK 201
           VMQRWP++ + GAEF  P  K
Sbjct: 488 VMQRWPDSIAKGAEFTMPVAK 508


>ref|YP_724792.1| methylmalonate-semialdehyde dehydrogenase [Ralstonia eutropha H16]
 emb|CAJ91424.1| Methylmalonate-semialdehyde dehydrogenase [Ralstonia eutropha H16]
          Length = 505

 Score =  309 bits (792), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/201 (73%), Positives = 165/201 (82%)

Query: 1   LVSALAERTRNLKINDGMEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVP 60
           LV  LAER  +LKI +GME DAEMGP+VTAA KA++EG I KGVEEGA LV DGRG  VP
Sbjct: 305 LVPRLAERASSLKIRNGMESDAEMGPLVTAAHKAKVEGYIAKGVEEGAMLVTDGRGHTVP 364

Query: 61  GRENGFFVGGTLFDHVTPEMTIYKEEIFGPVLCVVRAPDVATAVELINNHEYGNGVAVFT 120
           G ENGF+VGGTLFDHV P+MTIYKEEIFGPVL VVR  D A AV LIN HEYGNGV+ +T
Sbjct: 365 GHENGFYVGGTLFDHVKPDMTIYKEEIFGPVLSVVRVHDFAEAVALINAHEYGNGVSCYT 424

Query: 121 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHVYGPEGVRFYTRAKA 180
            DGG+AR F RQI+VGMVG+NVP+PVPMA+ SFGGWKRSLFGDHH YG EGVRFYTR K+
Sbjct: 425 SDGGIARAFARQIQVGMVGINVPIPVPMAWHSFGGWKRSLFGDHHAYGEEGVRFYTRYKS 484

Query: 181 VMQRWPNTASAGAEFAFPQMK 201
           VMQRWP++ + GAEF  P  K
Sbjct: 485 VMQRWPDSIAKGAEFTMPVAK 505


>ref|YP_002007100.1| methylmalonate-semialdehyde dehydrogenase / malonate-semialdehyde
           dehydrogenase [Cupriavidus taiwanensis LMG 19424]
 emb|CAQ71039.1| Methylmalonate-semialdehyde dehydrogenase / Malonate-semialdehyde
           dehydrogenase [Cupriavidus taiwanensis LMG 19424]
          Length = 508

 Score =  309 bits (792), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 164/201 (81%)

Query: 1   LVSALAERTRNLKINDGMEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVP 60
           LV  LAER R LKI +GME DAEMGP+VT A KA++EG I +GV EGATLV DGRG KV 
Sbjct: 308 LVPRLAERARALKIRNGMEADAEMGPLVTGAHKAKVEGYIAQGVAEGATLVTDGRGHKVD 367

Query: 61  GRENGFFVGGTLFDHVTPEMTIYKEEIFGPVLCVVRAPDVATAVELINNHEYGNGVAVFT 120
           G ENGF+VGGTLFDHVTPEMTIYKEEIFGPVL VVR  D A AV LIN HEYGNGV+ +T
Sbjct: 368 GHENGFYVGGTLFDHVTPEMTIYKEEIFGPVLSVVRVHDFAEAVALINAHEYGNGVSCYT 427

Query: 121 RDGGVAREFVRQIEVGMVGVNVPLPVPMAFSSFGGWKRSLFGDHHVYGPEGVRFYTRAKA 180
            DGG+AR F RQI+VGMVG+NVP+PVPMA+ SFGGWKRSLFGDHH YG EGVRFYTR K+
Sbjct: 428 SDGGIARAFARQIQVGMVGINVPIPVPMAWHSFGGWKRSLFGDHHAYGEEGVRFYTRYKS 487

Query: 181 VMQRWPNTASAGAEFAFPQMK 201
           VMQRWP+  + GAEF  P  K
Sbjct: 488 VMQRWPDAIAKGAEFTMPVAK 508