BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0211.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778023.1| branched-chain amino acid ABC transporter pe... 761 0.0 ref|ZP_06845628.1| Extracellular ligand-binding receptor [Burkho... 664 0.0 ref|YP_001890244.1| ABC branched chain amino acid family transpo... 663 0.0 ref|YP_002153533.1| hypothetical protein BCAS0140 [Burkholderia ... 661 0.0 ref|ZP_02468562.1| ABC-type branched-chain amino acid transport ... 658 0.0 >ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ66115.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/397 (91%), Positives = 381/397 (95%) Query: 1 MMKRRDFLKLSALAAPGALSYTDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLVLQK 60 M+ RR FLKLSALAAPGALSY DVFAQA++I FGCPVPMSGPFAANGK+AD+GMKL LQK Sbjct: 1 MISRRHFLKLSALAAPGALSYHDVFAQAESIAFGCPVPMSGPFAANGKFADLGMKLALQK 60 Query: 61 YGKVLGKNLSYTTLDTEGKPATAVRKVQETMEKGTRFFAGGILSGEALAMGKEAEKGGSI 120 YGKVLGK+ SY LDTEGKPATAVRK+QE++EKGTRFFAGGILSGEALAMGKEA+K G++ Sbjct: 61 YGKVLGKSTSYVNLDTEGKPATAVRKMQESIEKGTRFFAGGILSGEALAMGKEADKAGAV 120 Query: 121 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGDGL 180 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFG+GL Sbjct: 121 FITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGEGL 180 Query: 181 LSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTLRQAV 240 LSAAK IFKEKGIEHVGNSYHSL EKEFSGYLTNA+AAKPDVLLLLNFGSQSSDTLRQAV Sbjct: 181 LSAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSDTLRQAV 240 Query: 241 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVNDALKI 300 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVK VND LKI Sbjct: 241 SFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKLVNDNLKI 300 Query: 301 DPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQVIKNY 360 DPNYSLAGSYICTKI+LDAIIKANSTDPKAVIAAMEGMKYEGLTG+EEIRKGDHQVIKNY Sbjct: 301 DPNYSLAGSYICTKIILDAIIKANSTDPKAVIAAMEGMKYEGLTGSEEIRKGDHQVIKNY 360 Query: 361 YLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 YLLKGKAK+KM NKNDYADI+SSGKSFL L+KT CKL Sbjct: 361 YLLKGKAKAKMANKNDYADIVSSGKSFLPLEKTQCKL 397 >ref|ZP_06845628.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|EFG66721.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 402 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/401 (78%), Positives = 354/401 (88%), Gaps = 5/401 (1%) Query: 2 MKRRDFLKLSALAA-PGALSY---TDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLV 57 M RR+ LKL+AL+A PGAL FAQA +QF CPVPMSGPFAANGKYAD+GMKL Sbjct: 1 MNRRNMLKLAALSAVPGALGSLVARSAFAQAGTLQFACPVPMSGPFAANGKYADLGMKLA 60 Query: 58 LQKYGKVLGKNLSYTTLDTEGKPATAVRKVQE-TMEKGTRFFAGGILSGEALAMGKEAEK 116 +++YGKVLG+ L+YT LDTEGKPATAVR+VQE +K RFFAGGILS EALAMGKE +K Sbjct: 61 IEQYGKVLGQPLAYTVLDTEGKPATAVRRVQEIAQQKNARFFAGGILSSEALAMGKEVQK 120 Query: 117 GGSIFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVF 176 G IFITTAGADEITG DCN ATFRWSVPT+GAIEQTVRPL++ +P AKRWYTITPQYVF Sbjct: 121 AGGIFITTAGADEITGKDCNDATFRWSVPTYGAIEQTVRPLIQTLPKAKRWYTITPQYVF 180 Query: 177 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTL 236 GDGLLSAAKAIFKEKGIEHVGNSYHSL EKEFSGYLTNA+AAKPDVLL+LNFGSQSSDTL Sbjct: 181 GDGLLSAAKAIFKEKGIEHVGNSYHSLNEKEFSGYLTNAVAAKPDVLLILNFGSQSSDTL 240 Query: 237 RQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVND 296 RQAVSFGMKNNCTILMAWASGLEQFE+LGAD+C+GVYFGAQYWH ID+P N++ VK N Sbjct: 241 RQAVSFGMKNNCTILMAWASGLEQFESLGADLCEGVYFGAQYWHDIDSPLNRDLVKRTNA 300 Query: 297 ALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQV 356 A K +PNYSLAGSYICTKI+LD I+KA + DPK VIAA+EGMKY+GLTG EE+RKGDHQV Sbjct: 301 AFKANPNYSLAGSYICTKILLDGIVKAGNVDPKKVIAALEGMKYDGLTGPEEVRKGDHQV 360 Query: 357 IKNYYLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 +KNYYLLKGKAK+KM+N +DYADI+SSG+SFL LDKT CK+ Sbjct: 361 LKNYYLLKGKAKNKMKNADDYADIVSSGQSFLPLDKTGCKM 401 >ref|YP_001890244.1| ABC branched chain amino acid family transporter periplasmic ligand binding protein [Burkholderia phytofirmans PsJN] gb|ACD20873.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Burkholderia phytofirmans PsJN] Length = 402 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/401 (78%), Positives = 353/401 (88%), Gaps = 5/401 (1%) Query: 2 MKRRDFLKLSALAAP----GALSYTDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLV 57 M RR+ LKL+AL+A G+L FAQA A+QF CPVPMSGPFAANGKYAD+GMKL Sbjct: 1 MNRRNMLKLAALSAVPGTLGSLVARSAFAQAGALQFACPVPMSGPFAANGKYADLGMKLA 60 Query: 58 LQKYGKVLGKNLSYTTLDTEGKPATAVRKVQE-TMEKGTRFFAGGILSGEALAMGKEAEK 116 +++YGKVLG+ L+YT LDTEGKPATAVR+VQE +K RFFAGGILS EALAMGKE +K Sbjct: 61 IEQYGKVLGQPLAYTVLDTEGKPATAVRRVQEIAQQKNARFFAGGILSSEALAMGKEVQK 120 Query: 117 GGSIFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVF 176 G IFITTAGADEITG DCN ATFRWSVPT+GAIEQTVRPL++ MP AKRWYTITPQYVF Sbjct: 121 AGGIFITTAGADEITGKDCNDATFRWSVPTYGAIEQTVRPLIQMMPKAKRWYTITPQYVF 180 Query: 177 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTL 236 GDGLLSAAK IFKEKGIEHVGNSYHSL EKEFSGYLTNA+AAKPDVLL+LNFGSQSSDTL Sbjct: 181 GDGLLSAAKTIFKEKGIEHVGNSYHSLNEKEFSGYLTNAVAAKPDVLLILNFGSQSSDTL 240 Query: 237 RQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVND 296 RQAVSFGMKNNCTILMAWASGLEQFE+LGAD+C+GVYFGAQYWH ID+P N++ VK N Sbjct: 241 RQAVSFGMKNNCTILMAWASGLEQFESLGADLCEGVYFGAQYWHDIDSPLNRDLVKRANT 300 Query: 297 ALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQV 356 A K +PNYSLAGSYICTKI+LD I+KA + DPK V+AA+EGMKY+GLTG EE+RKGDHQV Sbjct: 301 AFKANPNYSLAGSYICTKILLDGIVKAGNVDPKKVVAALEGMKYDGLTGPEEVRKGDHQV 360 Query: 357 IKNYYLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 +KNYYLLKGKAK+KM+N +DYADI+SSG+SFL LDKT CK+ Sbjct: 361 LKNYYLLKGKAKNKMKNADDYADIVSSGQSFLPLDKTGCKM 401 >ref|YP_002153533.1| hypothetical protein BCAS0140 [Burkholderia cenocepacia J2315] emb|CAR57073.1| putative exported protein [Burkholderia cenocepacia J2315] Length = 402 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/401 (78%), Positives = 351/401 (87%), Gaps = 5/401 (1%) Query: 2 MKRRDFLKLSALAA-PGAL---SYTDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLV 57 M RR+ LKL+AL+A PGAL S FAQ IQ CPVPMSGPFAANGKYAD+GM+LV Sbjct: 1 MNRRELLKLAALSAVPGALGSMSSRVAFAQGSPIQLACPVPMSGPFAANGKYADLGMQLV 60 Query: 58 LQKYGKVLGKNLSYTTLDTEGKPATAVRKVQE-TMEKGTRFFAGGILSGEALAMGKEAEK 116 +++YGKVLG L+YT LDTEGKPATAVR+VQE +KG RFFAGGILS E+LAMGKE +K Sbjct: 61 VKQYGKVLGAPLAYTALDTEGKPATAVRRVQEIAQQKGVRFFAGGILSSESLAMGKEVQK 120 Query: 117 GGSIFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVF 176 G +FITTAGADEITG DCN ATFRWSVPTFGAIEQTVRPL++ +P AKRWYTITPQYVF Sbjct: 121 AGGVFITTAGADEITGKDCNAATFRWSVPTFGAIEQTVRPLIQMLPKAKRWYTITPQYVF 180 Query: 177 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTL 236 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNA AA+PDVLL+LNFGSQSSDTL Sbjct: 181 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAAAAQPDVLLILNFGSQSSDTL 240 Query: 237 RQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVND 296 RQAVSFGMK NCTIL+AWASGLEQFE LG DICDGVYFGAQYWH ID+P N++ VK N Sbjct: 241 RQAVSFGMKRNCTILLAWASGLEQFEALGPDICDGVYFGAQYWHGIDSPLNRDLVKRANA 300 Query: 297 ALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQV 356 A K +PNYSLAGSYIC+KI++DA++KA S DPK V+AAMEGMKY+GLTG EEIRKGDHQV Sbjct: 301 AFKANPNYSLAGSYICSKILIDAMVKAGSADPKKVVAAMEGMKYDGLTGPEEIRKGDHQV 360 Query: 357 IKNYYLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 +KNYYLLKGK K++M+N +DYADI+SSG+SFL LDKT CKL Sbjct: 361 LKNYYLLKGKPKARMKNADDYADIVSSGQSFLPLDKTGCKL 401 >ref|ZP_02468562.1| ABC-type branched-chain amino acid transport system periplasmic component [Burkholderia thailandensis MSMB43] Length = 402 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/401 (78%), Positives = 347/401 (86%), Gaps = 5/401 (1%) Query: 2 MKRRDFLKLSALAAP----GALSYTDVFAQADAIQFGCPVPMSGPFAANGKYADMGMKLV 57 M RR+ LKL+AL+A GALS FAQ +Q CPVPMSGPFAANGKYAD+GMKL Sbjct: 1 MNRRELLKLAALSAVPGALGALSSRAAFAQGAGVQLACPVPMSGPFAANGKYADLGMKLA 60 Query: 58 LQKYGKVLGKNLSYTTLDTEGKPATAVRKVQE-TMEKGTRFFAGGILSGEALAMGKEAEK 116 +Q+YGKVLG LSY TLDT G PATAVR+VQE +KG RFFAGGILS EALAMGKE EK Sbjct: 61 IQQYGKVLGMPLSYMTLDTAGSPATAVRRVQEIAQQKGVRFFAGGILSSEALAMGKEVEK 120 Query: 117 GGSIFITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVF 176 G +FITTAGADEITG DCN ATFRWSVPTFGAIEQTVRPL+ +P AKRWYTITPQYVF Sbjct: 121 AGGVFITTAGADEITGKDCNAATFRWSVPTFGAIEQTVRPLIGMLPKAKRWYTITPQYVF 180 Query: 177 GDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDTL 236 G+GLL+AAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNA+AAKPDVLL+LNFGSQSSDTL Sbjct: 181 GEGLLTAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAVAAKPDVLLILNFGSQSSDTL 240 Query: 237 RQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVND 296 RQAVSFGMKNNCTILMAWASGLEQFE LGAD+CDGVYFGAQYWH ID+P N++ VK + Sbjct: 241 RQAVSFGMKNNCTILMAWASGLEQFEALGADLCDGVYFGAQYWHGIDSPLNRDLVKRASA 300 Query: 297 ALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQV 356 A K +PNYSLAGSYIC+KI+LD ++KA S DPK VIAA+EGMKY+GLTG E IRKGDHQV Sbjct: 301 AFKANPNYSLAGSYICSKILLDGMVKAGSADPKKVIAALEGMKYDGLTGAEAIRKGDHQV 360 Query: 357 IKNYYLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 397 +KNYYLLKGK KS+MRN +DYADI+SSG+SFL +DKT CKL Sbjct: 361 LKNYYLLKGKPKSRMRNADDYADIVSSGQSFLPVDKTGCKL 401