BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0209.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778025.1| branched-chain amino acid ABC transporter pe... 445 e-123 ref|YP_001890242.1| inner-membrane translocator [Burkholderia ph... 433 e-119 ref|YP_001567038.1| inner-membrane translocator [Delftia acidovo... 429 e-118 ref|YP_004491226.1| ABC transporter integral membrane protein [D... 426 e-117 ref|YP_003909616.1| inner-membrane translocator [Burkholderia sp... 422 e-116 >ref|YP_003778025.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66117.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 265/322 (82%), Positives = 290/322 (90%), Gaps = 5/322 (1%) Query: 1 MKHIAHFRFTLLAIAVVLLLPLCVGSGTLATEVLIYALAALGCNLLLGYTGLMSFGQGIF 60 MK IAHFR+TLLA AV LLLPL + SGTLATEVL++ALAALGCNLLLGYTGLMSFGQGIF Sbjct: 1 MKQIAHFRYTLLAAAVALLLPLLLPSGTLATEVLVFALAALGCNLLLGYTGLMSFGQGIF 60 Query: 61 FGIGSYATGLALLHLKAPLLISLAIAAVIGGLIALLVGWFSIRQRGTYFVMLTLAFAQMF 120 FG+GSY G+ LL LK LL +LA+AA+ G L+ALLVGWFSIRQRGTYFVMLTLAFAQMF Sbjct: 61 FGVGSYTAGVVLLQLKLALLPALALAALGGALVALLVGWFSIRQRGTYFVMLTLAFAQMF 120 Query: 121 YFLAYTMKDITGGDNGLLDIPRPNLSVLGHTLLPTTTSWQYYSFVAILFVVVFWLLQRVV 180 YFLAYTMKD+TGGDNGLLDIPRP L++ G TLLPTT+SWQYY+ VAILFV+VFWLLQRVV Sbjct: 121 YFLAYTMKDVTGGDNGLLDIPRPPLALFGLTLLPTTSSWQYYTVVAILFVLVFWLLQRVV 180 Query: 181 DSVLGRTLLAVRDNEAXLKARASAVGYDVTLLKLAAFVISGAVTGLAGGLHAMMTGVAPL 240 DSVLG+TLLAVR+NE ARASA+GYDV LLKLAAFVISGAVTGLAGGLHAMMTGVAPL Sbjct: 181 DSVLGKTLLAVRENE----ARASALGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPL 236 Query: 241 SNIEYHTSESILIMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGFLLIGVSL 300 SNIEYHTSE+IL+MTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLG LLI VSL Sbjct: 237 SNIEYHTSEAILVMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGLLLIAVSL 296 Query: 301 YMHKGLYGLAQSLLRRLRPGEK 322 YM KGL+GLA ++ +R G K Sbjct: 297 YMQKGLFGLAMKIIDAVR-GNK 317 >ref|YP_001890242.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] gb|ACD20871.1| inner-membrane translocator [Burkholderia phytofirmans PsJN] Length = 351 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/333 (68%), Positives = 267/333 (80%), Gaps = 7/333 (2%) Query: 1 MKHIAH-FRFTLLAIAVVLLLPLCVGSGTLATEVLIYALAALGCNLLLGYTGLMSFGQGI 59 +KH H +RF LL + VV +LPL + SG+LATEVL++ALAALGCNLLLG+TGL+SFGQGI Sbjct: 21 LKHSLHRYRFLLLTLLVVCILPLTLRSGSLATEVLVFALAALGCNLLLGHTGLLSFGQGI 80 Query: 60 FFGIGSYATGLALLHLKAPLLISLAIAAVIGGLIALLVGWFSIRQRGTYFVMLTLAFAQM 119 FFG+GSY GL L P+ ++L +AVIG A LVGWFSIRQRGTYFVMLTLAF Q+ Sbjct: 81 FFGLGSYCAGLVLTKTGLPVSMALLASAVIGAAAAALVGWFSIRQRGTYFVMLTLAFGQL 140 Query: 120 FYFLAYTMKDITGGDNGLLDIPRPNLSVLGHTLLPTTTSWQYYSFVAILFVVVFWLLQRV 179 FYFLAYT D+TGGDNGLLDIPRP L + G L+P T+ WQYY FVA+LF+VVFWLL RV Sbjct: 141 FYFLAYTTPDLTGGDNGLLDIPRPALGLFGKALVPLTSPWQYYGFVAVLFLVVFWLLMRV 200 Query: 180 VDSVLGRTLLAVRDNEAXLKARASAVGYDVTLLKLAAFVISGAVTGLAGGLHAMMTGVAP 239 SV GRTLLA+RDNE ARA+AVGYDV KL AFVISGAVTGLAG LHA+MTG+AP Sbjct: 201 SHSVFGRTLLAIRDNE----ARAAAVGYDVKRFKLMAFVISGAVTGLAGALHALMTGIAP 256 Query: 240 LSNIEYHTSESILIMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGFLLIGVS 299 LSNI+YHTSE IL+MTVIGGTGNLFASVLGA+FYVL +WLSTLWPRWL+LLG +LI VS Sbjct: 257 LSNIDYHTSEMILVMTVIGGTGNLFASVLGAAFYVLFADWLSTLWPRWLLLLGIVLIAVS 316 Query: 300 LYMHKGLYGLAQSLLRRLRPGEKPSADVAKESH 332 LYM +GL+GL + + + LR K SAD ++ Sbjct: 317 LYMQRGLWGLGERVWQSLR--RKSSADAGNDAD 347 >ref|YP_001567038.1| inner-membrane translocator [Delftia acidovorans SPH-1] gb|ABX38653.1| inner-membrane translocator [Delftia acidovorans SPH-1] Length = 333 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/322 (68%), Positives = 261/322 (81%), Gaps = 7/322 (2%) Query: 1 MKHIAHFRFTLLAIAVVLLLPLCVGSGTLATEVLIYALAALGCNLLLGYTGLMSFGQGIF 60 MK + LLA+A+V+ +PLC+ SG+LA+EVLI+ LAA+GCNLLLGYTGL+SFGQGIF Sbjct: 1 MKTMTRHSHLLLALAIVVAMPLCMQSGSLASEVLIFGLAAMGCNLLLGYTGLLSFGQGIF 60 Query: 61 FGIGSYATGLALLHLKAPLLISLAIAAVIGGLIALLVGWFSIRQRGTYFVMLTLAFAQMF 120 FG+GSY L L P+ ++L A +G + A +VGW +IRQRGTYFVMLTLAFAQMF Sbjct: 61 FGLGSYTIALLLTRWPLPMPLALLAATAMGAVGAAIVGWVAIRQRGTYFVMLTLAFAQMF 120 Query: 121 YFLAYTMKDITGGDNGLLDIPRPNLSVLGHTLLPTTTSWQYYSFVAILFVVVFWLLQRVV 180 YFLAY+ DITGGDNGLLD+PRP L+V G TL P T WQYY FVA+LF+VVFWLL+RV Sbjct: 121 YFLAYSATDITGGDNGLLDVPRPALAVAGQTLWPLATPWQYYGFVAVLFLVVFWLLRRVC 180 Query: 181 DSVLGRTLLAVRDNEAXLKARASAVGYDVTLLKLAAFVISGAVTGLAGGLHAMMTGVAPL 240 DS+ GRTLLAVRDNE RA+AVGYD+ LLKL AFVISGAVTGLAG LHAMMTG+APL Sbjct: 181 DSMFGRTLLAVRDNE----ERAAAVGYDLRLLKLQAFVISGAVTGLAGALHAMMTGIAPL 236 Query: 241 SNIEYHTSESILIMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGFLLIGVSL 300 SN EYHTSE IL+MTVIGGTGNL ASVLGA+FYVL+G+WLSTLWPRWL+LLG +L+ VSL Sbjct: 237 SNAEYHTSEMILVMTVIGGTGNLLASVLGAAFYVLLGDWLSTLWPRWLLLLGVVLMIVSL 296 Query: 301 YMHKGLYGLAQS---LLRRLRP 319 + +GL+GL +S L+RR P Sbjct: 297 GLQRGLWGLGESLWALVRRKGP 318 >ref|YP_004491226.1| ABC transporter integral membrane protein [Delftia sp. Cs1-4] gb|AEF92871.1| ABC-type transporter, integral membrane subunit [Delftia sp. Cs1-4] Length = 330 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/312 (69%), Positives = 258/312 (82%), Gaps = 7/312 (2%) Query: 11 LLAIAVVLLLPLCVGSGTLATEVLIYALAALGCNLLLGYTGLMSFGQGIFFGIGSYATGL 70 LLA+A+V+ +PLC+ SG+LA+EVLI+ LAA+GCNLLLGYTGL+SFGQGIFFG+GSY L Sbjct: 8 LLALAIVVAMPLCMQSGSLASEVLIFGLAAMGCNLLLGYTGLLSFGQGIFFGLGSYTIAL 67 Query: 71 ALLHLKAPLLISLAIAAVIGGLIALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAYTMKDI 130 L P+ ++L A +G + A +VGW +IRQRGTYFVMLTLAFAQMFYFLAY+ DI Sbjct: 68 LLTRWPLPMPLALLAATAMGAVGAAIVGWVAIRQRGTYFVMLTLAFAQMFYFLAYSATDI 127 Query: 131 TGGDNGLLDIPRPNLSVLGHTLLPTTTSWQYYSFVAILFVVVFWLLQRVVDSVLGRTLLA 190 TGGDNGLLD+PRP L+V G TL P T WQYY FVA+LF+VVFWLL+RV DS+ GRTLLA Sbjct: 128 TGGDNGLLDVPRPALAVAGQTLWPLATPWQYYGFVAVLFLVVFWLLRRVCDSMFGRTLLA 187 Query: 191 VRDNEAXLKARASAVGYDVTLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEYHTSES 250 VRDNE RA+AVGYD+ LLKL AFVISGAVTGLAG LHAMMTG+APLSN EYHTSE Sbjct: 188 VRDNE----ERAAAVGYDLRLLKLQAFVISGAVTGLAGALHAMMTGIAPLSNAEYHTSEM 243 Query: 251 ILIMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGFLLIGVSLYMHKGLYGLA 310 IL+MTVIGGTGNL ASVLGA+FYVL+G+WLSTLWPRWL+LLG +L+ VSL + +GL+GL Sbjct: 244 ILVMTVIGGTGNLLASVLGAAFYVLLGDWLSTLWPRWLLLLGVVLMIVSLGLQRGLWGLG 303 Query: 311 QS---LLRRLRP 319 +S L+RR P Sbjct: 304 ESLWALVRRKGP 315 >ref|YP_003909616.1| inner-membrane translocator [Burkholderia sp. CCGE1003] gb|ADN60325.1| inner-membrane translocator [Burkholderia sp. CCGE1003] Length = 369 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 260/323 (80%), Gaps = 4/323 (1%) Query: 6 HFRFTLLAIAVVLLLPLCVGSGTLATEVLIYALAALGCNLLLGYTGLMSFGQGIFFGIGS 65 +RF LLA+ VV +LPL + SG+LATEVL++ALAALGCNLLLG+TGL+SFGQGIFFG+GS Sbjct: 27 RYRFLLLALLVVCILPLTLRSGSLATEVLVFALAALGCNLLLGHTGLLSFGQGIFFGLGS 86 Query: 66 YATGLALLHLKAPLLISLAIAAVIGGLIALLVGWFSIRQRGTYFVMLTLAFAQMFYFLAY 125 Y+ GL L P+ ++L A +IG A LVGWFSIRQRGTYFVMLTLAF Q+FYFLAY Sbjct: 87 YSAGLVLTKAALPVPVALLAAILIGAAAAALVGWFSIRQRGTYFVMLTLAFGQLFYFLAY 146 Query: 126 TMKDITGGDNGLLDIPRPNLSVLGHTLLPTTTSWQYYSFVAILFVVVFWLLQRVVDSVLG 185 T D+TGGDNGLLDIPRP L + G L+ T+ WQYY FVA+LF+VVFWL+ RV SV G Sbjct: 147 TTPDLTGGDNGLLDIPRPALGLFGKELVALTSPWQYYGFVAVLFLVVFWLMMRVSHSVFG 206 Query: 186 RTLLAVRDNEAXLKARASAVGYDVTLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIEY 245 RTLLA+RDNE ARA+AVGYDV KL AFV+SGAVTGLAG LHA+MTG+APLSNI+Y Sbjct: 207 RTLLAIRDNE----ARAAAVGYDVKRFKLMAFVVSGAVTGLAGALHALMTGIAPLSNIDY 262 Query: 246 HTSESILIMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGFLLIGVSLYMHKG 305 HTSE IL+MTVIGGTGNLFASVLGA+FYVL +WLSTLWPRWL+LLG +L+ VSLYM +G Sbjct: 263 HTSEMILVMTVIGGTGNLFASVLGAAFYVLFADWLSTLWPRWLLLLGIVLMAVSLYMQRG 322 Query: 306 LYGLAQSLLRRLRPGEKPSADVA 328 L+GL + L + LR +A A Sbjct: 323 LWGLGERLWQALRRAPADNAHTA 345