BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0192.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, put... 172 7e-41 ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, put... 172 9e-41 ref|YP_439181.1| TRAP transporter DctM family protein [Burkholde... 171 1e-40 ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit... 167 2e-39 ref|YP_551357.1| tripartite ATP-independent periplasmic transpor... 158 1e-36 >ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis TXDOH] Length = 608 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 35 RLQRLLELASAAVLAVDVLVVFFSVIWRYALHDPLEWSEEVARALMITLVFFGAASVLGR 94 RL +E AAVLA DVLVVF SVI+RY LHDP +W+EEVA ALMI LVF GAA+VL R Sbjct: 8 RLAHWIEYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLAR 67 Query: 95 SRHVGIDSLRGIFPKSWLPYVLRLCDWVIAFVSLSLAYTTWLLLEISNDQTTPSGLPQTI 154 S+HVGID RG+FPK W P ++ WVIA V+ +L ++ LLL S Q TPSGLP I Sbjct: 68 SQHVGIDLFRGMFPKRWQPVLVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWI 127 Query: 155 FVLPVLIGSLLLSVFAITHALKKFGRNALVSGLIGAVVV-GGVLALQTFWPDHALRPMHV 213 V P++IGS+ ++VFA+ +AL R ++ LIG V++ V A F P HAL+P + Sbjct: 128 NVYPLVIGSVFMTVFALANALNG-ARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFL 186 Query: 214 LLFGF 218 L+ GF Sbjct: 187 LMAGF 191 >ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis Bt4] Length = 631 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 35 RLQRLLELASAAVLAVDVLVVFFSVIWRYALHDPLEWSEEVARALMITLVFFGAASVLGR 94 RL +E AAVLA DVLVVF SVI+RY LHDP +W+EEVA ALMI LVF GAA+VL R Sbjct: 31 RLVHWIEYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLAR 90 Query: 95 SRHVGIDSLRGIFPKSWLPYVLRLCDWVIAFVSLSLAYTTWLLLEISNDQTTPSGLPQTI 154 S+HVGID RG+FPK W P ++ WVIA V+ +L ++ LLL S Q TPSGLP I Sbjct: 91 SQHVGIDLFRGMFPKRWQPALVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWI 150 Query: 155 FVLPVLIGSLLLSVFAITHALKKFGRNALVSGLIGAVVV-GGVLALQTFWPDHALRPMHV 213 V P++IGS+ ++VFA+ +AL R ++ LIG V++ V A F P HAL+P + Sbjct: 151 NVYPLVIGSVFMTVFALANALNG-ARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFL 209 Query: 214 LLFGF 218 L+ GF Sbjct: 210 LMAGF 214 >ref|YP_439181.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] ref|ZP_05590564.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] gb|ABC35695.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis E264] Length = 631 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 35 RLQRLLELASAAVLAVDVLVVFFSVIWRYALHDPLEWSEEVARALMITLVFFGAASVLGR 94 RL +E AAVLA DVLVVF SVI+RY LHDP +W+EEVA ALMI LVF GAA+VL R Sbjct: 31 RLVHWIEYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAAALMIVLVFLGAATVLAR 90 Query: 95 SRHVGIDSLRGIFPKSWLPYVLRLCDWVIAFVSLSLAYTTWLLLEISNDQTTPSGLPQTI 154 S+HVGID RG+FPK W P ++ WVIA V+ +L ++ LLL S Q TPSGLP I Sbjct: 91 SQHVGIDLFRGMFPKRWQPALVHAGHWVIAGVAGNLCVSSCLLLADSYGQMTPSGLPAWI 150 Query: 155 FVLPVLIGSLLLSVFAITHALKKFGRNALVSGLIGAVVV-GGVLALQTFWPDHALRPMHV 213 V P++IGS+ ++VFA+ +AL R ++ LIG V++ V A F P HAL+P + Sbjct: 151 NVYPLVIGSVFMTVFALANALNG-ARKTVLGTLIGCVLLAAAVFAWNAFVPGHALKPGFL 209 Query: 214 LLFGF 218 L+ GF Sbjct: 210 LMAGF 214 >ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] gb|ACC75999.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] Length = 631 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/185 (50%), Positives = 125/185 (67%), Gaps = 2/185 (1%) Query: 35 RLQRLLELASAAVLAVDVLVVFFSVIWRYALHDPLEWSEEVARALMITLVFFGAASVLGR 94 RL +E AAVLA DVLVVF SVI+RY LHDP +W+EEVA ALM+ LVFFGAA+VL R Sbjct: 31 RLMHGIEYLCAAVLAADVLVVFLSVIYRYFLHDPFDWAEEVAGALMVVLVFFGAATVLAR 90 Query: 95 SRHVGIDSLRGIFPKSWLPYVLRLCDWVIAFVSLSLAYTTWLLLEISNDQTTPSGLPQTI 154 S+HVG+D RG+ P+ W P ++ L WVIA V+ +L ++ LLL S Q TPSGLP I Sbjct: 91 SQHVGVDLFRGMLPRRWQPALVHLGHWVIAGVAGNLCVSSCLLLVDSYGQMTPSGLPAWI 150 Query: 155 FVLPVLIGSLLLSVFAITHALKKFGRNALVSGLIGAVVV-GGVLALQTFWPDHALRPMHV 213 V P++IGS+ ++VFA+ +AL R ++ LIG V++ V F P HA++P + Sbjct: 151 KVYPLVIGSVFMAVFALANALNG-ARRTVLGTLIGCVLLAAAVFGWNAFVPGHAIKPGIL 209 Query: 214 LLFGF 218 L+ GF Sbjct: 210 LMAGF 214 >ref|YP_551357.1| tripartite ATP-independent periplasmic transporter DctQ [Polaromonas sp. JS666] gb|ABE46459.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Polaromonas sp. JS666] Length = 240 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/183 (48%), Positives = 117/183 (63%) Query: 36 LQRLLELASAAVLAVDVLVVFFSVIWRYALHDPLEWSEEVARALMITLVFFGAASVLGRS 95 L R E + AVLA+DVLVVF SV++RY LH P +W+EEVARALM+ LVF GAA+VL RS Sbjct: 33 LMRWTEYLAGAVLALDVLVVFASVVFRYFLHAPFDWAEEVARALMVVLVFIGAATVLARS 92 Query: 96 RHVGIDSLRGIFPKSWLPYVLRLCDWVIAFVSLSLAYTTWLLLEISNDQTTPSGLPQTIF 155 +HVGID RG FP SW P +L+ W+I VS SL ++ LL SN TT G PQ I+ Sbjct: 93 QHVGIDLFRGFFPDSWQPALLQSGSWIIVGVSFSLFLSSCALLVDSNGMTTSIGFPQWIY 152 Query: 156 VLPVLIGSLLLSVFAITHALKKFGRNALVSGLIGAVVVGGVLALQTFWPDHALRPMHVLL 215 + PV+IGSL +++F +AL R ++ +G +V V T P+ A++P +L Sbjct: 153 IYPVVIGSLFMTLFGAANALSGPRRTVWLTLAVGVGLVAAVTLWNTLLPEQAVKPWVLLT 212 Query: 216 FGF 218 GF Sbjct: 213 VGF 215