BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0182.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_05967743.1| putative amino acid ABC transporter, periplas... 177 9e-43 ref|YP_001454479.1| hypothetical protein CKO_02937 [Citrobacter ... 177 1e-42 ref|YP_004828750.1| Extracellular ligand-binding receptor [Enter... 173 2e-41 ref|YP_003775040.1| branched-chain amino acid ABC transporter pe... 171 8e-41 ref|ZP_03699527.1| Extracellular ligand-binding receptor [Lutiel... 164 1e-38 >ref|ZP_05967743.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] gb|EFC56733.1| putative amino acid ABC transporter, periplasmic amino acid-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 385 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 137/238 (57%), Gaps = 1/238 (0%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 ++GH G Y V+ L A AVID+ T G F + A+ K+V + Sbjct: 148 VMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLDAQGVKIVDRQYVD 207 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLR 120 ++ DF+ +L A R K D+IFFGG+ QAA L R ++++G++ T + G G FL+ Sbjct: 208 DKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMKATLM-GAGGFVSQTFLQ 266 Query: 121 DAGAAADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDA 180 A +GV+A+ PG+P ++MPG K FE+ Y R+ +I +AP YDA +VLVAA+ A Sbjct: 267 LAQKEGEGVVALEPGLPVEQMPGGKAFEQAYQSRYHTHIELHAPFAYDATRVLVAAMEKA 326 Query: 181 DSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTYDASKS 238 DS PA L AL + YSG+TG I+FD+ GNL +P FT+Y++ D W P +KS Sbjct: 327 DSVDPADYLPALRAISYSGVTGQIAFDKEGNLTSPSFTVYKVVDGKWQPQTVLGGAKS 384 >ref|YP_001454479.1| hypothetical protein CKO_02937 [Citrobacter koseri ATCC BAA-895] gb|ABV14043.1| hypothetical protein CKO_02937 [Citrobacter koseri ATCC BAA-895] Length = 385 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 1/238 (0%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 ++GH G Y V+ L A AVID+ T G F + +A+ K+V + Sbjct: 148 VMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLEAQGVKIVDRQYVD 207 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLR 120 ++ DF+ +L A R K D+IFFGG+ QAA L R ++++G+ T + G G FL+ Sbjct: 208 DKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMNATLM-GAGGFVSQTFLQ 266 Query: 121 DAGAAADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDA 180 A +GV+A+ PG+P ++MPG K FE+EY R+ +I +AP YDA +VLVAA+ A Sbjct: 267 LAQKEGEGVVALEPGLPVEQMPGGKAFEQEYQSRYHTHIELHAPFAYDATRVLVAAMEKA 326 Query: 181 DSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTYDASKS 238 DS PA L L + YSG+TG I+FD GNL +P FT+Y++ D W P +K+ Sbjct: 327 DSVDPAEYLPVLRAISYSGVTGQIAFDNEGNLKSPSFTVYKVVDGKWQPQTVLGGTKT 384 >ref|YP_004828750.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] gb|AEN64965.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] Length = 385 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 135/238 (56%), Gaps = 1/238 (0%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 ++GH G Y V+ L A AVID+ T G F + +A+ K+V + Sbjct: 148 VMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQGLADEFIKSLEAQGVKIVDRQYVD 207 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLR 120 ++ DF+ +L A R K D+IFFGG+ QAA L R ++++G+ T + G G FL+ Sbjct: 208 DKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARRIKQLGMNATLM-GAGGFVSQTFLQ 266 Query: 121 DAGAAADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDA 180 A +GV+A+ PG+P D+MPG K FE+ Y R+ +I +AP YDA +VLVAA+ A Sbjct: 267 LAQKEGEGVVALEPGLPVDQMPGGKAFEQAYQSRYHTHIELHAPFAYDATRVLVAAMEKA 326 Query: 181 DSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTYDASKS 238 +S P+ L AL + YSG+TG I+FD GNL P FT+Y++ D W P +K+ Sbjct: 327 NSVDPSEYLPALRAINYSGVTGQIAFDNEGNLKAPSFTVYKVVDGKWQPQTVLGGTKA 384 >ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63132.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 11 LLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTIL 70 L A Y VD L ID+ T G F R +VV S+ ++SDFN L Sbjct: 167 LAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVSDKTSDFNAAL 226 Query: 71 EATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAGAAADGVL 130 R +PD+IFFGGL QA L +++RR+ L + GT GL FL AG A+G L Sbjct: 227 LEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLM-ASPGTLGLPFLMRAGPDANGAL 285 Query: 131 AINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPARILA 190 + PG P DKMPGWK+F + Y + F +++ YA Y+A Q ++ +R A S P RI Sbjct: 286 VLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAE 345 Query: 191 ALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPLQTYD 234 A++++R+ G++G ++F+ G+LL P FT+Y++KD W P+ ++ Sbjct: 346 AMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARFN 389 >ref|ZP_03699527.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] gb|EEG07707.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] Length = 403 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 131/216 (60%), Gaps = 1/216 (0%) Query: 12 LADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTILE 71 L + V+ L A A+ID+ T G F++ +A ++V + +S+DF IL Sbjct: 169 LGAFAVNELKAKKIAIIDDRTAYGQGLADEFEKAAKAGGAEIVKREFTNDKSTDFAAILT 228 Query: 72 ATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAGAAADGVLA 131 + +P+VIFFGG+ Q+ L + ++R+GL + G +GT ++L+ AGA A+G A Sbjct: 229 TLKALKPEVIFFGGMEAQSGPLTKQMKRLGLTAKLLSG-DGTRTPDYLKLAGADAEGNYA 287 Query: 132 INPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPARILAA 191 G P DKMPG+ +F ++Y +F ++ ++P +YDAV+ LVAA++ ADS PA+ L A Sbjct: 288 STAGQPNDKMPGFTSFSEKYKAKFKQDVAVFSPYSYDAVRTLVAAMQKADSAEPAKYLPA 347 Query: 192 LYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHW 227 L KV ++G+TG + FD G+ LNP TIYQ+K+ W Sbjct: 348 LSKVEFAGVTGPVKFDAKGDRLNPTVTIYQVKNGQW 383