BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0168.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754751.1| Rossmann fold nucleotide-binding protein Smf... 456 e-126 ref|YP_001098481.1| putative nucleotide-binding protein involved... 449 e-124 ref|YP_001351831.1| DNA processing protein [Janthinobacterium sp... 422 e-116 ref|ZP_04579599.1| DNA processing protein [Oxalobacter formigene... 418 e-115 ref|ZP_04577445.1| DNA processing protein [Oxalobacter formigene... 416 e-114 >ref|YP_004754751.1| Rossmann fold nucleotide-binding protein Smf [Collimonas fungivorans Ter331] gb|AEK63928.1| Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake [Collimonas fungivorans Ter331] Length = 405 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 249/373 (66%), Positives = 284/373 (76%), Gaps = 10/373 (2%) Query: 8 DAAELRDWIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIARALLQAPT 67 DA EL W+R QT GVG + ARRLL FGLP +IFS F L V PERIA ALL AP+ Sbjct: 32 DADELAAWLRLEQTAGVGAETARRLLVAFGLPANIFSCSFSALHKVVPERIAYALLAAPS 91 Query: 68 AMMQNRLELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLSATSLAVV 127 +Q +E T +W QPGNR+ TLAD+ YPQALL+I+DPP++LY+KGR+ELL ++AVV Sbjct: 92 DAVQALIERTQEWLQQPGNRLFTLADSAYPQALLDISDPPLMLYVKGRAELLERPAMAVV 151 Query: 128 GSRNATVQGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGR------GSSVAVI 181 GSRNATVQGV NA+RF+E S LTV+SG+ALGIDAAAH G LRG GS+VAVI Sbjct: 152 GSRNATVQGVANADRFAEILSQRGLTVISGMALGIDAAAHQGALRGAAGNPEGGSTVAVI 211 Query: 182 GTGIDIVYPMRNRGLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEAA 241 GTG DIVYP RNRGLA ++A+ GCIVSEYPLGMP VAANFPRRNRIISGLAR VLVVEAA Sbjct: 212 GTGADIVYPARNRGLAHQIAEAGCIVSEYPLGMPGVAANFPRRNRIISGLARGVLVVEAA 271 Query: 242 AQSGSLITARTAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEELGKL-- 299 AQSGSLITAR AAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVES QDILEELG L Sbjct: 272 AQSGSLITARMAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESAQDILEELGSLQA 331 Query: 300 --PLLARQSPAPAITSADKHADDLLGAMGFDPVDADALSMRSGLDAAALSERLLTLELDG 357 A+ + P+ AD +LL +G+DPV D L+ RSG DAA+L RLL LEL G Sbjct: 332 AVATPAQPAAMPSAAPADSGGQELLAILGYDPVGFDVLAARSGSDAASLGGRLLELELAG 391 Query: 358 AVECLPGGRYRRV 370 +E LPG YRR+ Sbjct: 392 LIEALPGAIYRRI 404 >ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf protein) [Herminiimonas arsenicoxydans] emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas arsenicoxydans] Length = 372 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 241/370 (65%), Positives = 275/370 (74%), Gaps = 12/370 (3%) Query: 11 ELRDWIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIARALLQAPTAMM 70 +L W+R QT GVG D AR+LL FGLP +IF+A F L+ V PERIA ALL P + Sbjct: 6 DLASWLRLEQTPGVGPDTARKLLGAFGLPENIFAANFIALQQVVPERIAHALLAPPAENV 65 Query: 71 QNRLELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLSATSLAVVGSR 130 + +E T WAAQ GN +LTLADADYP ALL I DPPILLY KGR LLS SLAVVGSR Sbjct: 66 RALIEATHKWAAQAGNHVLTLADADYPPALLKIPDPPILLYAKGRLNLLSRPSLAVVGSR 125 Query: 131 NATVQGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGR------GSSVAVIGTG 184 NAT QG+ NAE+FSEA S A L++VSG+ALGID AAH GGL GS++AVIGTG Sbjct: 126 NATTQGIVNAEKFSEALSLAGLSIVSGMALGIDTAAHRGGLLAARQAPHAGSTIAVIGTG 185 Query: 185 IDIVYPMRNRGLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEAAAQS 244 DIVYP RNR LA ++A+ GCI+SEYPLGMP +A+NFPRRNRIISGLAR VLVVEAA QS Sbjct: 186 ADIVYPARNRALAHQIAEAGCILSEYPLGMPAIASNFPRRNRIISGLARGVLVVEAALQS 245 Query: 245 GSLITARTAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEELG-KLPL-- 301 GSLITAR AAEQGRD+FAIPGSIHSPLSKGCH LIKQGAKLVE+ QDILEEL LP Sbjct: 246 GSLITARMAAEQGRDMFAIPGSIHSPLSKGCHLLIKQGAKLVETAQDILEELQYALPAAN 305 Query: 302 LARQSPAPAITSADKHADDLLGAMGFDPVDADALSMRSGLDAAALSERLLTLELDGAVEC 361 A +S APA+ D A +L A+GFDPVDAD L+ R LD A L +LL LEL +E Sbjct: 306 AASKSVAPAL---DAQAQQILQALGFDPVDADTLAARCQLDMATLHAQLLMLELSNQLEI 362 Query: 362 LPGGRYRRVN 371 LPG YRR++ Sbjct: 363 LPGALYRRLD 372 >ref|YP_001351831.1| DNA processing protein [Janthinobacterium sp. Marseille] gb|ABR88895.1| DNA processing protein [Janthinobacterium sp. Marseille] Length = 371 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/368 (60%), Positives = 265/368 (72%), Gaps = 11/368 (2%) Query: 11 ELRDWIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIARALLQAPTAMM 70 +L W+R + GVG MAR+LL+ FG P +IFS+ +L+ V IARALL AP+A Sbjct: 6 DLAHWLRLERAPGVGAGMARKLLTAFGPPQNIFSSSLSDLQQVVAPPIARALLAAPSAAT 65 Query: 71 QNRLELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLSATSLAVVGSR 130 +E T WAAQ N I TLADADYP LL I DPPILLY KGR LLS ++A+VGSR Sbjct: 66 LALIEHTQAWAAQSENHIFTLADADYPGTLLEIHDPPILLYAKGRIALLSHPAIAIVGSR 125 Query: 131 NATVQGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGR------GSSVAVIGTG 184 NA+ QG+ NAE+F+ + S + LT++SGLALGID AAH G L+ GS++AVIGTG Sbjct: 126 NASAQGITNAEQFAASLSSSGLTIISGLALGIDTAAHQGALQAMQTHVNAGSTIAVIGTG 185 Query: 185 IDIVYPMRNRGLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEAAAQS 244 +DIVYP RNR LA ++A+ GCI+SEYPLGMP +AANFPRRNRIISGLAR VLVVEAA QS Sbjct: 186 MDIVYPARNRQLAHQIAENGCILSEYPLGMPAIAANFPRRNRIISGLARGVLVVEAALQS 245 Query: 245 GSLITARTAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEEL--GKLPLL 302 GSLITAR AAEQGRD+FAIPGSIHSPL+KGCH LIKQGAKLVE+ QDILEEL +P Sbjct: 246 GSLITARMAAEQGRDMFAIPGSIHSPLAKGCHLLIKQGAKLVETAQDILEELEYAVIPAA 305 Query: 303 ARQSPAPAITSADKHADDLLGAMGFDPVDADALSMRSGLDAAALSERLLTLELDGAVECL 362 + P AD +L +MG+D VDAD L+ R LD A + LLTLELDG E L Sbjct: 306 PGERATP---PADAPYAHVLHSMGYDAVDADTLAQRCQLDIAEIHTHLLTLELDGHTEIL 362 Query: 363 PGGRYRRV 370 PGG YRR+ Sbjct: 363 PGGLYRRI 370 >ref|ZP_04579599.1| DNA processing protein [Oxalobacter formigenes OXCC13] gb|EEO30572.1| DNA processing protein [Oxalobacter formigenes OXCC13] Length = 375 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 212/374 (56%), Positives = 271/374 (72%), Gaps = 6/374 (1%) Query: 1 LTIANFNDAAELRDWIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIAR 60 + I+ D EL WIR T GVG+ A ++LS +GLP +IF ++E+ + ++A Sbjct: 1 MKISEKYDEEELAAWIRLQMTPGVGIQTAHKMLSAYGLPQNIFMTPYEEIARIVSPKMAD 60 Query: 61 ALLQAPTAMMQNRLELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLS 120 L + +++ T +W N +LTL+D YP+ LL IADPP++LY+KGR ELL+ Sbjct: 61 VLYAPVDPAITEQIDRTKEWLDDSSNMVLTLSDNRYPRQLLEIADPPLILYVKGRVELLT 120 Query: 121 ATSLAVVGSRNATVQGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGRGSSVAV 180 + S+A+VGSRNAT QG +AE F+ + S LT+VSGLALGID AAH GGL+GRGS+VAV Sbjct: 121 SPSIAIVGSRNATTQGRLDAEEFAHSLSDTGLTIVSGLALGIDTAAHEGGLKGRGSTVAV 180 Query: 181 IGTGIDIVYPMRNRGLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEA 240 IGTG DIVYP RNR LA R+A+EGCI+SE+PLG PVA+NFPRRNR+ISGL+ +LVVEA Sbjct: 181 IGTGADIVYPARNRELAHRIANEGCIISEFPLGSGPVASNFPRRNRVISGLSGGILVVEA 240 Query: 241 AAQSGSLITARTAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEELGKLP 300 AA+SGSLITA+ A +QGRDVFAIPGSIHSPLS+GCH+LI+QGAKLVES QDILEEL Sbjct: 241 AARSGSLITAKAAIDQGRDVFAIPGSIHSPLSRGCHELIRQGAKLVESSQDILEELKHFQ 300 Query: 301 -LLARQSPAPAITSADKHADD---LLGAMGFDPVDADALSMRSGLDAAALSERLLTLELD 356 ++ QS + D+ +D+ +L MG+DPVDAD LS R +DAA+LS LL LEL Sbjct: 301 DIVVNQSSGE--RAEDEFSDEQKLILAQMGYDPVDADILSERCDMDAASLSVELLNLELS 358 Query: 357 GAVECLPGGRYRRV 370 G VE LPGG YRR+ Sbjct: 359 GNVESLPGGFYRRL 372 >ref|ZP_04577445.1| DNA processing protein [Oxalobacter formigenes HOxBLS] gb|EEO28407.1| DNA processing protein [Oxalobacter formigenes HOxBLS] Length = 373 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/363 (55%), Positives = 269/363 (74%) Query: 8 DAAELRDWIRFMQTDGVGVDMARRLLSTFGLPGDIFSAGFDELRAVAPERIARALLQAPT 67 D EL WIR + T G+G+ A ++L+ +GLP +IF + EL+ + +IA A+ Sbjct: 8 DKEELAAWIRLVLTPGIGIRTAHKMLTAYGLPQNIFMTSYRELQRIVSPQIADAIYAPVP 67 Query: 68 AMMQNRLELTLDWAAQPGNRILTLADADYPQALLNIADPPILLYIKGRSELLSATSLAVV 127 + ++E T W +PGN ILTL+D++YP LL I DPP++LY+KGR ELLS+ S+A+V Sbjct: 68 EAITEQIEKTQKWLEEPGNAILTLSDSNYPGLLLEIPDPPLMLYVKGRVELLSSPSIAIV 127 Query: 128 GSRNATVQGVQNAERFSEAASHAALTVVSGLALGIDAAAHHGGLRGRGSSVAVIGTGIDI 187 GSRNAT QG +A+ F+ + S + LT++SGLALGIDAAAH GGL+G+GS++AV+GTG DI Sbjct: 128 GSRNATAQGRMDAKEFARSLSESGLTIISGLALGIDAAAHRGGLKGKGSTIAVVGTGADI 187 Query: 188 VYPMRNRGLAQRLADEGCIVSEYPLGMPPVAANFPRRNRIISGLARAVLVVEAAAQSGSL 247 VYP RNR LA ++A+EGC++SE+PLG P+A+NFPRRNR+ISGL+ +LVVEAAA+SGSL Sbjct: 188 VYPARNRELALQIAEEGCVISEFPLGTGPLASNFPRRNRVISGLSGGILVVEAAARSGSL 247 Query: 248 ITARTAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESEQDILEELGKLPLLARQSP 307 ITA+TA +QGRDVFAIPGSIHSPLS+GCH+LI+QGAKLVE+ QD+LEEL ++ S Sbjct: 248 ITAKTAIDQGRDVFAIPGSIHSPLSRGCHELIRQGAKLVETSQDVLEELKHYNSVSESSD 307 Query: 308 APAITSADKHADDLLGAMGFDPVDADALSMRSGLDAAALSERLLTLELDGAVECLPGGRY 367 +D+L MGFDPVD+D L R +DAA+L+ LL+LEL G VE L GG Y Sbjct: 308 RKMEPENTSLQEDILLQMGFDPVDSDTLCERCEIDAASLNVELLSLELAGEVESLAGGFY 367 Query: 368 RRV 370 RR+ Sbjct: 368 RRL 370