BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0161.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778060.1| transcription regulator protein [Herbaspiril...   213   8e-54
ref|YP_004754914.1| putative transcriptional regulator [Collimon...   209   2e-52
ref|ZP_08272803.1| putative transcriptional regulator LiuR of le...   202   1e-50
ref|YP_003746970.1| MerR family transcriptional regulator [Ralst...   182   1e-44
ref|YP_003905500.1| MerR family transcriptional regulator [Burkh...   179   9e-44

>ref|YP_003778060.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ66152.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  213 bits (542), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 119/142 (83%)

Query: 1   MPTYTITELAKEFDITPRAIRFYEDQGLLSPKREGSGGRNRVYAARERTRLKLTLRGKRL 60
           MPTYTITELA+EF ITPRAIRFYED G+L+PKREG GGR+RVY ARERTRLKLTLRGKRL
Sbjct: 1   MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60

Query: 61  GLTLSEIKNLVDMYESPKDTEAQLQRFLGVLAQHREKLERQREDLEVTLEEIAAHEAECL 120
           G TLSEIK+L+DMYESPKDT+AQLQRFLG+L QHREKLE+QREDLE+TL EIAAHE EC 
Sbjct: 61  GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120

Query: 121 HLLETDLPLKAPAKRSARTAAA 142
            LL    P    +K   +  AA
Sbjct: 121 QLLTDGKPRPLGSKPRRKAVAA 142


>ref|YP_004754914.1| putative transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK64091.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Collimonas fungivorans Ter331]
          Length = 134

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 113/125 (90%)

Query: 1   MPTYTITELAKEFDITPRAIRFYEDQGLLSPKREGSGGRNRVYAARERTRLKLTLRGKRL 60
           MPTYTITELA+EFDITPRAIRFYEDQGLLSPKR+G+GGRNRVYA RERTRLKLTLRGKRL
Sbjct: 1   MPTYTITELAREFDITPRAIRFYEDQGLLSPKRDGAGGRNRVYAGRERTRLKLTLRGKRL 60

Query: 61  GLTLSEIKNLVDMYESPKDTEAQLQRFLGVLAQHREKLERQREDLEVTLEEIAAHEAECL 120
           GLTLSEIK+LVDMY+SPKD+  QL+ FL VLA+HRE LE+QRED+EVTL EI AHE EC 
Sbjct: 61  GLTLSEIKSLVDMYDSPKDSAPQLELFLQVLARHREHLEQQREDIEVTLAEITAHEDECR 120

Query: 121 HLLET 125
            LL +
Sbjct: 121 RLLSS 125


>ref|ZP_08272803.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33734.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 142

 Score =  202 bits (515), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 116/142 (81%)

Query: 1   MPTYTITELAKEFDITPRAIRFYEDQGLLSPKREGSGGRNRVYAARERTRLKLTLRGKRL 60
           M TYTITEL++EFDITPRAIRFYEDQGLLSP REG+ GR RVY+ARERTRLKLTLRGKRL
Sbjct: 1   MSTYTITELSREFDITPRAIRFYEDQGLLSPSREGASGRVRVYSARERTRLKLTLRGKRL 60

Query: 61  GLTLSEIKNLVDMYESPKDTEAQLQRFLGVLAQHREKLERQREDLEVTLEEIAAHEAECL 120
           GLTLSEIK+LVDMYESP+DT AQ++ F+ VL QHR  LE QRED++VTL EI+AHEA+C 
Sbjct: 61  GLTLSEIKSLVDMYESPRDTIAQMKHFMEVLGQHRLTLEMQREDIDVTLAEISAHEAQCR 120

Query: 121 HLLETDLPLKAPAKRSARTAAA 142
            +L+     K   K  +RT + 
Sbjct: 121 KVLDGRATKKTAVKTVSRTKSV 142


>ref|YP_003746970.1| MerR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 emb|CBJ44388.1| putative transcriptional regulator, MerR family [Ralstonia
           solanacearum CFBP2957]
          Length = 165

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/137 (67%), Positives = 108/137 (78%), Gaps = 2/137 (1%)

Query: 3   TYTITELAKEFDITPRAIRFYEDQGLLSPKREGSGGRNRVYAARERTRLKLTLRGKRLGL 62
           ++TIT+LA+EFDITPRAIRFYEDQGLLSP R+G GGR RVY+ARERTRLKLTLRGKRLGL
Sbjct: 28  SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87

Query: 63  TLSEIKNLVDMYESPKDTEAQLQRFLGVLAQHREKLERQREDLEVTLEEIAAHEAECLHL 122
           +L EIK ++D+YESP+DT  QL+RFL  LAQHR  L +Q EDL   L EI  HEA+C HL
Sbjct: 88  SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRHL 147

Query: 123 LET--DLPLKAPAKRSA 137
           L+       KAP +R A
Sbjct: 148 LDEARSGGAKAPKRRKA 164


>ref|YP_003905500.1| MerR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gb|ADN56209.1| transcriptional regulator, MerR family [Burkholderia sp. CCGE1003]
          Length = 146

 Score =  179 bits (455), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 4   YTITELAKEFDITPRAIRFYEDQGLLSPKREGSGGRNRVYAARERTRLKLTLRGKRLGLT 63
           YTITELA+EFD+TPRAIRFYEDQGLLSP REGS G  RVY+ R+RTRLKLTLRGKRLG T
Sbjct: 5   YTITELAREFDVTPRAIRFYEDQGLLSPSREGSSGLRRVYSGRDRTRLKLTLRGKRLGFT 64

Query: 64  LSEIKNLVDMYESPKDTEAQLQRFLGVLAQHREKLERQREDLEVTLEEIAAHEAECLHLL 123
           LSEI++L+D+YESP DT  QL  FL  +A+HRE LERQ EDL  TLE++A +EA+   LL
Sbjct: 65  LSEIRDLLDVYESPTDTVPQLHAFLDTVARHREVLERQLEDLNATLEDLAQYEAQARALL 124

Query: 124 ETDLPLKAPAKRSARTAAARKSA 146
           E+     A AK  AR A   KSA
Sbjct: 125 ESGTHAAAGAK-DARQARESKSA 146