BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0116.p (353 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003119627.1| amidase [Catenulispora acidiphila DSM 44928]... 218 1e-54 ref|ZP_08008032.1| amidase [Bacillus sp. 2_A_57_CT2] >gi|3173944... 206 6e-51 ref|YP_001242973.1| putative amidase [Bradyrhizobium sp. BTAi1] ... 204 1e-50 ref|NP_773922.1| amidase AmiC [Bradyrhizobium japonicum USDA 110... 201 2e-49 ref|YP_001203053.1| putative amidase [Bradyrhizobium sp. ORS 278... 199 8e-49 >ref|YP_003119627.1| amidase [Catenulispora acidiphila DSM 44928] gb|ACU77786.1| Amidase [Catenulispora acidiphila DSM 44928] Length = 502 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/283 (46%), Positives = 166/283 (58%), Gaps = 3/283 (1%) Query: 1 MSKPALSWKEWGRLDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITS 60 MS P SW EW DA+ALA+ VR V+A + QA A LGAV+E F + + Sbjct: 1 MSLP-FSWTEWFTADALALADHVRRGAVTAEQVAEQAGAAVDRFGLALGAVVELFADAVA 59 Query: 61 APSADGANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLI 120 P + GA+ G +G PLF+KD GS + GRL E GS L + A+ PL NL AG Sbjct: 60 DPESTGADRSGLFYGAPLFMKDSGSGMAGRLREWGSPLATGQICAQDCPLTTNLRAAGFN 119 Query: 121 SVGRSTTAELGMTYDTTTTYRG-LKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTD 179 +GRS+ E G +DTT T G L + RNPWN D TPGGSSGGSAALVAAGV P+A D Sbjct: 120 LIGRSSLPEWGKAFDTTYTQDGALVIARNPWNLDRTPGGSSGGSAALVAAGVVPIAKGGD 179 Query: 180 GAGSTRIPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASD 239 AGS R+PA+ TGL+GLK +RG LP P NE N + EG +RTVRD AA LD Sbjct: 180 AAGSVRVPAAFTGLVGLKPTRGLLPPPTGTNELANHRVQEGVLTRTVRDQAAALDYMIRP 239 Query: 240 YPAGNSFVSGKSPTHTFASALQRAPGKLRIALSTGAWGRATAC 282 + AG++F++ P+ F L +RI +ST +WG C Sbjct: 240 H-AGSNFIAAARPSTEFRHLLDSDVPPVRIGVSTSSWGLPGGC 281 >ref|ZP_08008032.1| amidase [Bacillus sp. 2_A_57_CT2] gb|EFV75218.1| amidase [Bacillus sp. 2_A_57_CT2] Length = 495 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/290 (43%), Positives = 171/290 (58%), Gaps = 7/290 (2%) Query: 3 KPALSWKEWGRLDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAP 62 K ++W EW LDA+ LAELVR Q++ E Q A L P++ A++E FD+ + P Sbjct: 2 KLVMNWDEWANLDAIGLAELVRKGQITPGEVAQQVTLAIDALNPEVNAIIEVFDDAVNDP 61 Query: 63 SADGANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISV 122 DG NPDG GVP +KD+G T+ GRL E GS L + RSA L + +AGL + Sbjct: 62 MKDGTNPDGVFAGVPYLMKDIGPTLKGRLQEMGSLLMRGNRSAADSFLTKRIRQAGLNII 121 Query: 123 GRSTTAELGMTYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAG 182 GR+TT E G+ ++ + VTRNPWN DYT GSS G+AA VAAG+ P++H+TDG G Sbjct: 122 GRTTTPEYGLC--SSAENPAVYVTRNPWNLDYTTCGSSAGTAAAVAAGIIPISHATDGGG 179 Query: 183 STRIPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASDYPA 242 S RIPA + G IGLK SRG + + ++ + +G SRT+RDTAAF+D+ P Sbjct: 180 SIRIPAGVNGNIGLKPSRGVFSVAPNGSDLMGSVSAQGCNSRTIRDTAAFVDSCRGGAPG 239 Query: 243 GNSFVSGKSPTHTFASALQRAPGKLRIALSTGAWG--RATACXTRARARA 290 F+ P+ ++ ++R PG+LRIA+S WG RAT RA Sbjct: 240 --EFMPYWMPSQPYSELIRRDPGRLRIAVSH-QWGDYRATPQIVAELERA 286 >ref|YP_001242973.1| putative amidase [Bradyrhizobium sp. BTAi1] gb|ABQ39067.1| putative amidase [Bradyrhizobium sp. BTAi1] Length = 491 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/287 (42%), Positives = 162/287 (56%), Gaps = 5/287 (1%) Query: 6 LSWKEWGRLDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAPSAD 65 +SW EW R D +ALA V++ +++AAE QA E ++P+L V+E F + P Sbjct: 5 MSWDEWARHDGMALAARVKSGELTAAELARQAAEGIAKVDPKLCGVVEVFADAIEDPIKA 64 Query: 66 GANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRS 125 GAN G G+P +KDLG T+ GRL E GS + R L A + +AGL +GR+ Sbjct: 65 GANAQGPFAGLPFLMKDLGPTMAGRLQEQGSLFMRGNRPVADTHLTAKMRKAGLNLMGRT 124 Query: 126 TTAELGMTYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGSTR 185 TT E G+ ++ + VTRNPWN DYT GSS GSAA+VAAGV P+AH+TDG GS R Sbjct: 125 TTPEFGVC--SSAENPAVYVTRNPWNTDYTTCGSSAGSAAMVAAGVVPIAHATDGGGSIR 182 Query: 186 IPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASDYPAGNS 245 IPA + G IGLKVSRG + ++ +G SR+VRDTAAF+D P Sbjct: 183 IPAGVNGNIGLKVSRGVFSIAPHLSDLTGLVSIQGCQSRSVRDTAAFVDHCRGGAPG--E 240 Query: 246 FVSGKSPTHTFASALQRAPGKLRIALSTGAWGRATACXTRARARARV 292 F+ + + ++R PGKLRIALS WG A A RV Sbjct: 241 FMPYWTTPEPYVELIKRDPGKLRIALSH-QWGDYRATPHIAAELERV 286 >ref|NP_773922.1| amidase AmiC [Bradyrhizobium japonicum USDA 110] dbj|BAC52547.1| amiC [Bradyrhizobium japonicum USDA 110] Length = 485 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/278 (44%), Positives = 163/278 (58%), Gaps = 9/278 (3%) Query: 6 LSWKEWGRLDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAPSAD 65 +SW EW + D V LA VR +++ E QA A + P L V+E F+++ + P+ D Sbjct: 1 MSWNEWAQHDGVGLAARVRKGELTPKELARQAAAAVAKVNPALSGVVELFEDVIADPAKD 60 Query: 66 GANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGRS 125 GAN G G+P +KDLG T+ GRL E GS L + R++ L +AGL +GR+ Sbjct: 61 GANLAGPFAGLPFLMKDLGPTMKGRLQEMGSLLMRGNRASADTFLTGKFRQAGLNLIGRT 120 Query: 126 TTAELGM--TYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGS 183 TT E G+ + D Y VTRNPWN DYT GSS GSAA+VAAGV P+AH+TDG GS Sbjct: 121 TTPEFGVCSSADNPAVY----VTRNPWNTDYTTCGSSAGSAAMVAAGVVPIAHATDGGGS 176 Query: 184 TRIPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASDYPAG 243 RIPA + G IGLKVSRG L ++ +G SR+VRDTAAF+D A PA Sbjct: 177 IRIPAGVNGNIGLKVSRGVFSLAPHMSDLTGLVSIQGCQSRSVRDTAAFVDHARG--PAP 234 Query: 244 NSFVSGKSPTHTFASALQRAPGKLRIALSTGAWGRATA 281 F+ + ++ ++R PGKLRIALS WG TA Sbjct: 235 GEFMPFWTTAQPYSEMIKRDPGKLRIALSH-TWGDYTA 271 >ref|YP_001203053.1| putative amidase [Bradyrhizobium sp. ORS 278] emb|CAL74816.1| putative amidase [Bradyrhizobium sp. ORS 278] Length = 491 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 164/288 (56%), Gaps = 5/288 (1%) Query: 5 ALSWKEWGRLDAVALAELVRTRQVSAAETVAQAVEAARLLEPQLGAVLETFDNITSAPSA 64 A+SW EW R D +ALA VR +++AAE QA E ++PQL V+E F + P Sbjct: 4 AMSWDEWARHDGMALAARVRNGELTAAELAQQAAEGIAKVDPQLSGVVEVFADAVDDPIK 63 Query: 65 DGANPDGALWGVPLFIKDLGSTIGGRLAENGSALNKDKRSARTDPLIANLHRAGLISVGR 124 GAN DG+ G+P +KDLG T+ GRL E GS + R A L + RAGL +GR Sbjct: 64 AGANADGSFAGLPFLMKDLGPTMAGRLQEQGSLYMRGNRPAADTHLTKKMRRAGLNLMGR 123 Query: 125 STTAELGMTYDTTTTYRGLKVTRNPWNPDYTPGGSSGGSAALVAAGVTPLAHSTDGAGST 184 +TT E G+ ++ + VTRNPW+ DYT GSS GSAA+VAAGV P+AH+TDG GS Sbjct: 124 TTTPEFGVC--SSAENPAVYVTRNPWDTDYTTCGSSAGSAAMVAAGVVPIAHATDGGGSI 181 Query: 185 RIPASLTGLIGLKVSRGRLPLPWSFNEYGNATIGEGTFSRTVRDTAAFLDAAASDYPAGN 244 RIPA + G IGLKVSRG + ++ +G SR+VRDTAAF+D P Sbjct: 182 RIPAGVNGNIGLKVSRGVFSIAPHLSDLSGLVSIQGCQSRSVRDTAAFVDHCRGGAPG-- 239 Query: 245 SFVSGKSPTHTFASALQRAPGKLRIALSTGAWGRATACXTRARARARV 292 F+ + + ++R PG+LRIALS WG A A RV Sbjct: 240 EFMPYWTAPEPYVELIKRDPGRLRIALSH-QWGDYRATPHIASELQRV 286