BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0111.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753315.1| nitrate ABC transporter periplasmic nitrate-... 864 0.0 ref|YP_004154788.1| family 3 extracellular solute-binding protei... 740 0.0 ref|ZP_08504062.1| Putative nitrate/sulfonate/bicarbonate transp... 705 0.0 ref|YP_004699663.1| putative nitrate ABC transporter periplasmic... 682 0.0 ref|NP_742376.1| nitrate ABC transporter periplasmic protein [Ps... 679 0.0 >ref|YP_004753315.1| nitrate ABC transporter periplasmic nitrate-binding protein [Collimonas fungivorans Ter331] gb|AEK62492.1| nitrate ABC transporter, periplasmic nitrate-binding protein, putative [Collimonas fungivorans Ter331] Length = 470 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/470 (87%), Positives = 440/470 (93%), Gaps = 6/470 (1%) Query: 1 MQLRHNIYMSLFGISFALAAASMTGAVQAETIRIAIGTQDTTINCATGGLLIRELKLLEK 60 M R N+Y++LFG++ + G+ AETIRIAIGTQDTTINCATGGLLIRELKLLEK Sbjct: 1 MHFRQNLYITLFGLAL------LAGSASAETIRIAIGTQDTTINCATGGLLIRELKLLEK 54 Query: 61 YLPHDGRYKDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRSL 120 YLPH+G+YKDAQYDIQWKNFTSGAPLTNEMVAGKLD+GSMADFPGSFNGAA QKAGKRS+ Sbjct: 55 YLPHEGKYKDAQYDIQWKNFTSGAPLTNEMVAGKLDIGSMADFPGSFNGAAHQKAGKRSI 114 Query: 121 FITVLSGSTTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPEK 180 F+TVLSGS TGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVK QGWDPEK Sbjct: 115 FVTVLSGSITGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKAQGWDPEK 174 Query: 181 DVNIITQAPEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQANTPTLHGSLVD 240 DVNI+TQAPEVAGSALQSNKIDAHADFVPFAELFPHRG+ARKIFDGSQ TPTLHGSLVD Sbjct: 175 DVNIVTQAPEVAGSALQSNKIDAHADFVPFAELFPHRGFARKIFDGSQTGTPTLHGSLVD 234 Query: 241 SDYAKKYPEIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRD 300 +DYAKKYPEIV+AYLRAAIEADRL AEPEKYSELIEK+TGI+AEVNYLFHGPLGLQTRD Sbjct: 235 ADYAKKYPEIVVAYLRAAIEADRLIAAEPEKYSELIEKITGIDAEVNYLFHGPLGLQTRD 294 Query: 301 FTWKPEYRQAVKTSIDTLKAMKRTETDLDANTFIVDEYLRTAFKQSGLDYEAHLKNYAKS 360 FTWKPEYRQAVKTSIDTLKAMKRTETDLDA +FIVD+Y+R AFKQSGLDYEAHLKNYAK Sbjct: 295 FTWKPEYRQAVKTSIDTLKAMKRTETDLDAASFIVDDYIRAAFKQSGLDYEAHLKNYAKQ 354 Query: 361 PLTAKDSLTGKAITDPKRVGQIWVQGEPLVRHYATLETALSEARKLEKSGKKIRTVYAHD 420 PLTAKD+L+GK I DP+RVGQIWVQGEPLVRHYA+LE ALSEARKLEKSGKKIRTVYAHD Sbjct: 355 PLTAKDALSGKTIADPRRVGQIWVQGEPLVRHYASLENALSEARKLEKSGKKIRTVYAHD 414 Query: 421 RDSGLKLLAADAWFVQGKNDVSAFLLKSSAEAWAKKNNGKVLDFSAAKAG 470 R++GLKLLAADAWFVQ K +VSAFLLKSSAE WA+KNNG VLDFSAAKAG Sbjct: 415 RETGLKLLAADAWFVQSKGEVSAFLLKSSAETWARKNNGTVLDFSAAKAG 464 >ref|YP_004154788.1| family 3 extracellular solute-binding protein [Variovorax paradoxus EPS] gb|ADU36677.1| extracellular solute-binding protein family 3 [Variovorax paradoxus EPS] Length = 470 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/464 (76%), Positives = 400/464 (86%), Gaps = 7/464 (1%) Query: 7 IYMSLFGISFALAAASMTGAVQAETIRIAIGTQDTTINCATGGLLIRELKLLEKYLPHDG 66 ++ + FG+ L A VQAETIRIAIGTQDTTINCATGGLLIRELKLL+KYLP G Sbjct: 9 LWSATFGLMLTLPA------VQAETIRIAIGTQDTTINCATGGLLIRELKLLDKYLPRTG 62 Query: 67 RYKDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRSLFITVLS 126 +YKDAQY I+WKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAG++S+FITVLS Sbjct: 63 KYKDAQYQIEWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGRKSIFITVLS 122 Query: 127 GSTTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPEKDVNIIT 186 GSTTGSGNGIVVPK S VQS+AELKGKTISVPFAST+HGMLLRA++ QGWDP KDVNI T Sbjct: 123 GSTTGSGNGIVVPKDSKVQSIAELKGKTISVPFASTSHGMLLRAIQAQGWDPLKDVNITT 182 Query: 187 QAPEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQANTPTLHGSLVDSDYAKK 246 QAPEVAG ALQ+ K++AHADFVPFAELFP+RG+ARKI+DGSQAN PT HGSLVD +YAKK Sbjct: 183 QAPEVAGPALQAGKVEAHADFVPFAELFPYRGFARKIYDGSQANAPTFHGSLVDEEYAKK 242 Query: 247 YPEIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRDFTWKPE 306 YPE+V AYLRAA+EADRL AEPEKYSELI KVTGIEAEVNYLFHGPLGLQTRD +WKPE Sbjct: 243 YPEVVTAYLRAALEADRLVAAEPEKYSELIAKVTGIEAEVNYLFHGPLGLQTRDLSWKPE 302 Query: 307 YRQAVKTSIDTLKAMKRTETDLDANTFIVDEYLRTAFKQSGLDYEAHLKNYAKSPLTAKD 366 YRQAVKTS+DTL+ +KRT+ D+DAN F+ D Y+RTAFK++GLDY+ LKNYA++PL AKD Sbjct: 303 YRQAVKTSLDTLRLLKRTDNDIDANAFVQDGYIRTAFKEAGLDYDKQLKNYARAPLVAKD 362 Query: 367 SLTGKAITDPKRVGQIWVQGEPLVRHYATLETALSEARKLEKSGKKIRTVYAHDRDSGLK 426 + TGK ITD RV Q+WV GEPLVRHYA+ E A ++ +KLEKSGKK R VYA DR+SG K Sbjct: 363 ASTGKPITDVSRVAQVWVAGEPLVRHYASPENAFADLQKLEKSGKKARVVYAQDRNSGNK 422 Query: 427 LLAADAWFVQG-KNDVSAFLLKSSAEAWAKKNNGKVLDFSAAKA 469 LLAADAWFV G K +V AFLLK AE WA KN GKV DF+ +A Sbjct: 423 LLAADAWFVLGAKGEVDAFLLKDQAEGWAAKNGGKVTDFATVRA 466 >ref|ZP_08504062.1| Putative nitrate/sulfonate/bicarbonate transporter [Methyloversatilis universalis FAM5] gb|EGK72610.1| Putative nitrate/sulfonate/bicarbonate transporter [Methyloversatilis universalis FAM5] Length = 472 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/440 (74%), Positives = 383/440 (87%), Gaps = 1/440 (0%) Query: 30 ETIRIAIGTQDTTINCATGGLLIRELKLLEKYLPHDGRYKDAQYDIQWKNFTSGAPLTNE 89 ETIRIAIGTQDTTINCATGGLL+RELKLLEKYLP DGRYKD QYDIQW+NFTSGAPLTNE Sbjct: 23 ETIRIAIGTQDTTINCATGGLLVRELKLLEKYLPRDGRYKDVQYDIQWRNFTSGAPLTNE 82 Query: 90 MVAGKLDLGSMADFPGSFNGAAFQKAGKRSLFITVLSGSTTGSGNGIVVPKASTVQSLAE 149 MVA KLD G+MADFPGS NGAA KAGK+S+F++VLSGST GSGNGIVVP S VQS+AE Sbjct: 83 MVADKLDFGAMADFPGSLNGAAHLKAGKKSIFLSVLSGSTIGSGNGIVVPSGSAVQSVAE 142 Query: 150 LKGKTISVPFASTAHGMLLRAVKDQGWDPEKDVNIITQAPEVAGSALQSNKIDAHADFVP 209 LKGK ISVPFASTAHG+LLRA+ QGWD E+DV I+TQAPEVAGSALQ+NKIDAHA+FVP Sbjct: 143 LKGKQISVPFASTAHGLLLRALNAQGWDVERDVTIVTQAPEVAGSALQANKIDAHANFVP 202 Query: 210 FAELFPHRGYARKIFDGSQANTPTLHGSLVDSDYAKKYPEIVIAYLRAAIEADRLFTAEP 269 FA+LFP+RG+ARKI+DG+Q+N T HG+LV++DYAKKYPEIV+AYLRA+IEADRL AEP Sbjct: 203 FADLFPYRGFARKIYDGAQSNAATFHGALVNADYAKKYPEIVVAYLRASIEADRLIAAEP 262 Query: 270 EKYSELIEKVTGIEAEVNYLFHGPLGLQTRDFTWKPEYRQAVKTSIDTLKAMKRTETDLD 329 EKYSELI KVTGIEAEVNYLFHGPLGLQTRD +WKPEYRQA+ TSIDTL+ +KR ++DL Sbjct: 263 EKYSELIAKVTGIEAEVNYLFHGPLGLQTRDLSWKPEYRQALATSIDTLRLLKRHDSDLT 322 Query: 330 ANTFIVDEYLRTAFKQSGLDYEAHLKNYAKSPLTAKDSLTGKAITDPKRVGQIWVQGEPL 389 A+TFI D+Y+R AFK +GLDY+A LKNY K L AKD+LTGKAI DPKRV Q+WVQGEPL Sbjct: 323 ADTFIDDQYVRAAFKAAGLDYDAQLKNYDKLALKAKDALTGKAIEDPKRVAQVWVQGEPL 382 Query: 390 VRHYATLETALSEARKLEKSGKKIRTVYAHDRDSGLKLLAADAWF-VQGKNDVSAFLLKS 448 VRHYA+ E A ++ +K+E +GKK+R V+AHDR+ G+KLLA AWF K ++AFLLK Sbjct: 383 VRHYASPENAFADVKKIEAAGKKVRVVFAHDRNLGIKLLANQAWFATDAKGQINAFLLKD 442 Query: 449 SAEAWAKKNNGKVLDFSAAK 468 +A AWA+ N GKVLDF+A + Sbjct: 443 AATAWAQANKGKVLDFAAVR 462 >ref|YP_004699663.1| putative nitrate ABC transporter periplasmic nitrate-binding protein [Pseudomonas putida S16] gb|AEJ10783.1| putative nitrate ABC transporter, periplasmic nitrate-binding protein [Pseudomonas putida S16] Length = 468 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/460 (71%), Positives = 379/460 (82%), Gaps = 1/460 (0%) Query: 9 MSLFGISFALAAASMTGAVQAETIRIAIGTQDTTINCATGGLLIRELKLLEKYLPHDGRY 68 M L LA A AETIRIAIGTQDTTINCATGGLLIREL LL+KYLPHDG+Y Sbjct: 1 MRLVATVAGLALALTGLNASAETIRIAIGTQDTTINCATGGLLIRELGLLDKYLPHDGKY 60 Query: 69 KDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRSLFITVLSGS 128 KDA+Y ++WKNFTSGAPLTNEMVAGKLD G+MADFPGSFNG A AGKRSLFI+VLSGS Sbjct: 61 KDAKYQVEWKNFTSGAPLTNEMVAGKLDFGAMADFPGSFNGVAHLDAGKRSLFISVLSGS 120 Query: 129 TTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPEKDVNIITQA 188 GSGNGIVVP AS+VQSL ELKGKTISVPFASTAHGMLLRAV QGWDP+KDV II QA Sbjct: 121 VHGSGNGIVVPAASSVQSLGELKGKTISVPFASTAHGMLLRAVAAQGWDPQKDVRIIAQA 180 Query: 189 PEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQANTPTLHGSLVDSDYAKKYP 248 PE+AGSAL+SN+I+AHADFVPFAELFP+RG+ARKI+DG+QAN PT HG+LVD+DYAKKYP Sbjct: 181 PEIAGSALRSNRIEAHADFVPFAELFPNRGFARKIYDGAQANAPTFHGALVDADYAKKYP 240 Query: 249 EIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRDFTWKPEYR 308 E+V AYLRA++EADRL AEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRD TWKPEYR Sbjct: 241 EVVTAYLRASLEADRLIAAEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRDLTWKPEYR 300 Query: 309 QAVKTSIDTLKAMKRTETDLDANTFIVDEYLRTAFKQSGLDYEAHLKNYAKSPLTAKDSL 368 QAV TSIDTLK +K+T+ LD + FI D+Y+R AFKQ+GLDY+ LK+Y PL A D+L Sbjct: 301 QAVATSIDTLKLLKKTDRGLDTDKFIDDQYIRAAFKQAGLDYDKALKDYEPLPLKANDAL 360 Query: 369 TGKAITDPKRVGQIWVQGEPLVRHYATLETALSEARKLEKSGKKIRTVYAHDRDSGLKLL 428 TGK ITD R+ QIWV+GE VRHYA+ E AL +LE+ GK IR +YA DSG+KLL Sbjct: 361 TGKPITDFSRLAQIWVRGEDKVRHYASPEAALGALAQLEQEGKDIRAIYAQAADSGIKLL 420 Query: 429 AADAWFVQG-KNDVSAFLLKSSAEAWAKKNNGKVLDFSAA 467 A AWFV+ K +++AFLLK AE +A+ + G+ LDF +A Sbjct: 421 ANQAWFVRNTKGELAAFLLKDQAEQYAQAHGGEALDFVSA 460 >ref|NP_742376.1| nitrate ABC transporter periplasmic protein [Pseudomonas putida KT2440] gb|AAN65840.1|AE016212_6 nitrate ABC transporter, periplasmic nitrate-binding protein, putative [Pseudomonas putida KT2440] Length = 468 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/460 (71%), Positives = 378/460 (82%), Gaps = 1/460 (0%) Query: 9 MSLFGISFALAAASMTGAVQAETIRIAIGTQDTTINCATGGLLIRELKLLEKYLPHDGRY 68 M L LA A AETIRIAIGTQDTTINCATGGLLIREL LL+KYLPHDG+Y Sbjct: 1 MRLVATVAGLALALTGLNASAETIRIAIGTQDTTINCATGGLLIRELGLLDKYLPHDGKY 60 Query: 69 KDAQYDIQWKNFTSGAPLTNEMVAGKLDLGSMADFPGSFNGAAFQKAGKRSLFITVLSGS 128 KDA Y ++WKNFTSGAPLTNEMVAGKLD G+MADFPGSFNG A AGKRSLFI+VLSGS Sbjct: 61 KDATYQVEWKNFTSGAPLTNEMVAGKLDFGAMADFPGSFNGVAHLDAGKRSLFISVLSGS 120 Query: 129 TTGSGNGIVVPKASTVQSLAELKGKTISVPFASTAHGMLLRAVKDQGWDPEKDVNIITQA 188 GSGNGIVVP AS+VQSLAELKGKTISVPFASTAHGMLLRAV QGWDP+KDV II QA Sbjct: 121 VHGSGNGIVVPAASSVQSLAELKGKTISVPFASTAHGMLLRAVAAQGWDPQKDVRIIAQA 180 Query: 189 PEVAGSALQSNKIDAHADFVPFAELFPHRGYARKIFDGSQANTPTLHGSLVDSDYAKKYP 248 PE+AGSAL+SN+I+AHADFVPFAELFP+RG+ARKI+DG+QAN PT HG+LVD+DYAKKYP Sbjct: 181 PEIAGSALRSNRIEAHADFVPFAELFPNRGFARKIYDGAQANAPTFHGALVDADYAKKYP 240 Query: 249 EIVIAYLRAAIEADRLFTAEPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRDFTWKPEYR 308 E+V AYLRA++EADRL A+PEKYSELIEKVTGIEAEVNYLFHGPLGLQTRD TWKPEYR Sbjct: 241 EVVTAYLRASLEADRLIAAQPEKYSELIEKVTGIEAEVNYLFHGPLGLQTRDLTWKPEYR 300 Query: 309 QAVKTSIDTLKAMKRTETDLDANTFIVDEYLRTAFKQSGLDYEAHLKNYAKSPLTAKDSL 368 QAV TSIDTLK +K+T+ LD FI D+Y+R AFK++GLDY+ LK+Y PL A D+L Sbjct: 301 QAVATSIDTLKLLKKTDRGLDTGKFIDDQYIRAAFKEAGLDYDKALKDYDVLPLKADDAL 360 Query: 369 TGKAITDPKRVGQIWVQGEPLVRHYATLETALSEARKLEKSGKKIRTVYAHDRDSGLKLL 428 TG+ ITD R+ QIWV+GE VRHY + E AL +LE+ GK IR +YA DSG+KLL Sbjct: 361 TGQPITDFSRLAQIWVRGEDKVRHYTSPEAALGALAQLEQEGKDIRAIYAQAADSGIKLL 420 Query: 429 AADAWFVQ-GKNDVSAFLLKSSAEAWAKKNNGKVLDFSAA 467 A AWFV+ GK +++AFLLK AE +AK + G+ LDF +A Sbjct: 421 ANQAWFVRNGKGELAAFLLKDQAEQYAKAHGGEALDFVSA 460