BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0110.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753316.1| alkanesulfonates transport system permease [... 469 e-130 ref|YP_004154787.1| binding-protein-dependent transport systems ... 376 e-102 ref|YP_348889.1| binding-protein dependent transport system inne... 366 3e-99 ref|NP_742377.1| nitrate ABC transporter permease [Pseudomonas p... 364 7e-99 ref|YP_004699664.1| putative nitrate ABC transporter permease [P... 362 4e-98 >ref|YP_004753316.1| alkanesulfonates transport system permease [Collimonas fungivorans Ter331] gb|AEK62493.1| Alkanesulfonates transport system permease protein [Collimonas fungivorans Ter331] Length = 289 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 241/294 (81%), Positives = 256/294 (87%), Gaps = 5/294 (1%) Query: 1 MALSSSYSPTADGVPQDNAVSPTLSVRPSLDAVLQKWLHNWLHHGLRLASVAVCLLLWQW 60 MALS + DG QD P + S + WLH+GLRLASV C+LLWQW Sbjct: 1 MALSYPFDTAEDGDRQDE---PPWRLPASFS--FGIFFPQWLHYGLRLASVVACVLLWQW 55 Query: 61 ASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRVFAGFVVAALAGIVL 120 AS+ HLNLGLITFQNVPSPKEV+QAAW LAQSP+LL+HL ASLYRVFAGF+VAALAGIVL Sbjct: 56 ASSTHLNLGLITFQNVPSPKEVMQAAWNLAQSPKLLAHLGASLYRVFAGFIVAALAGIVL 115 Query: 121 GMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALFPILLNT 180 GMLIGR+RWLAD+L+PPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALFPILLNT Sbjct: 116 GMLIGRVRWLADILMPPLELLRPIPAVAWIPLAILMFPSSEISMIYITFIGALFPILLNT 175 Query: 181 IHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGMGTAWFCLVTAEMIA 240 IHGVEGVD RLIASARSLGSGRR+IF+EVILPAAAP IVTGLSIGMGTAWFCLVTAEMIA Sbjct: 176 IHGVEGVDPRLIASARSLGSGRRSIFSEVILPAAAPGIVTGLSIGMGTAWFCLVTAEMIA 235 Query: 241 GQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGLLMPWYLLQR 294 GQFGIGYYTWASYTIQNYADIIVGML IG MGMGSSALIKKLG LMPWYLLQR Sbjct: 236 GQFGIGYYTWASYTIQNYADIIVGMLLIGAMGMGSSALIKKLGNALMPWYLLQR 289 >ref|YP_004154787.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU36676.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 268 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/265 (69%), Positives = 219/265 (82%), Gaps = 8/265 (3%) Query: 38 LHNWLHHGLR--------LASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWAL 89 + N LH LR +A++ +C+L W A+ +NLG ITFQNVP P+EV ++AW+L Sbjct: 1 MTNSLHSNLRAMPRATWRIAALLLCVLAWHLATRERMNLGFITFQNVPPPREVAESAWSL 60 Query: 90 AQSPRLLSHLSASLYRVFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAW 149 QSP +L HLSASL RVF GF +AA+AG+ LG+ IGR RW D LLPPLE+LRPIPAVAW Sbjct: 61 VQSPLVLQHLSASLRRVFIGFGLAAIAGVALGLAIGRARWAEDTLLPPLEVLRPIPAVAW 120 Query: 150 IPLAILMFPSSEISMIYITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEV 209 IPLAILMFPSSE SM++ITFIGALFP+LLNT+HGVE VDARL+ASARSLG+GR A+F EV Sbjct: 121 IPLAILMFPSSEASMVFITFIGALFPVLLNTVHGVEAVDARLVASARSLGAGRLAVFREV 180 Query: 210 ILPAAAPSIVTGLSIGMGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIG 269 ILP A PS+VTGL+IGMGTAWFCLVTAEMI+GQFGIGYYTW SYTIQNYADI+VGMLFIG Sbjct: 181 ILPGALPSVVTGLAIGMGTAWFCLVTAEMISGQFGIGYYTWMSYTIQNYADIVVGMLFIG 240 Query: 270 VMGMGSSALIKKLGGLLMPWYLLQR 294 V+GMGSSAL++++G LMPW +Q Sbjct: 241 VLGMGSSALVRRVGQSLMPWRAVQE 265 >ref|YP_348889.1| binding-protein dependent transport system inner membrane protein [Pseudomonas fluorescens Pf0-1] gb|ABA74898.1| putative transport system permease [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 179/244 (73%), Positives = 209/244 (85%) Query: 47 RLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRV 106 R S+A CLL WQ A++ H NLGL+TF NVP+P V++AA L S +L+ HLSASL RV Sbjct: 25 RATSIAFCLLFWQLAASHHWNLGLVTFANVPTPLAVIEAALGLGDSGKLIQHLSASLGRV 84 Query: 107 FAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIY 166 FAG++ A + GI LG+ IGR +W D+LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM++ Sbjct: 85 FAGYLAALVIGIALGLAIGRSKWAEDLLLPPLEVLRPIPAVAWIPLAILMFPSSELSMVF 144 Query: 167 ITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGM 226 ITF GALFPILLNT+HGVEGVD RLIASA+SLG+GRRAI EVILP AAPSI+TGL+IGM Sbjct: 145 ITFTGALFPILLNTVHGVEGVDPRLIASAKSLGAGRRAILLEVILPGAAPSIITGLAIGM 204 Query: 227 GTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGLL 286 GT+WFCLVTAEMI+GQFGIGYYTW SYTIQNYADI+VGML IGV+GMGSS LIK+LGGL Sbjct: 205 GTSWFCLVTAEMISGQFGIGYYTWESYTIQNYADIVVGMLLIGVLGMGSSLLIKRLGGLF 264 Query: 287 MPWY 290 PW+ Sbjct: 265 TPWH 268 >ref|NP_742377.1| nitrate ABC transporter permease [Pseudomonas putida KT2440] gb|AAN65841.1|AE016212_7 nitrate ABC transporter, permease protein, putative [Pseudomonas putida KT2440] Length = 260 Score = 364 bits (935), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 178/249 (71%), Positives = 208/249 (83%) Query: 46 LRLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYR 105 +RLAS+ CLL WQ A+ V ++LGL+TF VP+PK VL AAW L S LL+HL +SL R Sbjct: 10 VRLASLLACLLFWQVAANVKMDLGLLTFTYVPTPKAVLDAAWQLLTSSTLLAHLGSSLAR 69 Query: 106 VFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMI 165 VFAG+ AAL G+ LG+LIGR +W D LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM+ Sbjct: 70 VFAGYATAALVGVALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSSELSMV 129 Query: 166 YITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIG 225 +ITF GALFPILLNT+HGVE VD RL+ASARSLG+GR AI EV+LP A PSIVTGL+IG Sbjct: 130 FITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALPSIVTGLAIG 189 Query: 226 MGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGL 285 MGT+WFCLVTAEMI+GQFGIGYYTW SYT+QNY DI+VGML IGV+GMGSSAL+K+LG L Sbjct: 190 MGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIVVGMLLIGVLGMGSSALVKRLGAL 249 Query: 286 LMPWYLLQR 294 PWY +R Sbjct: 250 ATPWYRTRR 258 >ref|YP_004699664.1| putative nitrate ABC transporter permease [Pseudomonas putida S16] gb|AEJ10784.1| putative nitrate ABC transporter permease protein [Pseudomonas putida S16] Length = 260 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 179/249 (71%), Positives = 210/249 (84%) Query: 46 LRLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYR 105 +RLAS+ CLL WQ A++V L+LGL+TF VP+PK VL+AAW L S LL+HL +SL R Sbjct: 10 VRLASLLGCLLFWQLAASVKLDLGLLTFTYVPTPKAVLEAAWQLLTSNTLLAHLGSSLSR 69 Query: 106 VFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMI 165 VFAG+ AAL G+ LG+LIGR +W D LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM+ Sbjct: 70 VFAGYATAALLGVALGVLIGRWKWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSSELSMV 129 Query: 166 YITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIG 225 +ITF GALFPILLNT+HGVE VD RL+ASARSLG+GR AI EV+LP A PSI+TGL+IG Sbjct: 130 FITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILGEVVLPGALPSIITGLAIG 189 Query: 226 MGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGL 285 MGT+WFCLVTAEMI+GQFGIGYYTW SYT+QNY DIIVGML IGV+GMGSSAL+K+LG L Sbjct: 190 MGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIIVGMLLIGVLGMGSSALVKRLGEL 249 Query: 286 LMPWYLLQR 294 PWY +R Sbjct: 250 ATPWYRTRR 258