BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0096.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774993.1| glycine cleavage system protein H [Herbaspir...   187   3e-46
ref|YP_003760049.1| glycine cleavage system H protein [Nitrosoco...   142   2e-32
ref|YP_610711.1| glycine cleavage system protein H [Pseudomonas ...   141   3e-32
ref|YP_004356941.1| glycine cleavage system H protein [Pseudomon...   140   5e-32
ref|YP_351155.1| glycine cleavage system protein H [Pseudomonas ...   140   5e-32

>ref|YP_003774993.1| glycine cleavage system protein H [Herbaspirillum seropedicae SmR1]
 gb|ADJ63085.1| glycine cleavage system H (lipoate-binding) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 125

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 101/124 (81%)

Query: 1   MLIPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVV 60
           M IPD L+YA+THEW++ E DGTLT+GITDFGQ+QLGPLVYV  P VG VL RGA++G+V
Sbjct: 1   MHIPDHLVYAQTHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLARGAESGIV 60

Query: 61  ESNKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAY 120
           ESNKTASD+HAPV GEV+AVN  L  TP+AINGAPYEQWIF+L+P   F    FLDAA Y
Sbjct: 61  ESNKTASDLHAPVDGEVVAVNELLVETPDAINGAPYEQWIFKLKPAAPFSAEGFLDAAGY 120

Query: 121 TKMI 124
            K+I
Sbjct: 121 LKLI 124


>ref|YP_003760049.1| glycine cleavage system H protein [Nitrosococcus watsonii C-113]
 gb|ADJ27728.1| glycine cleavage system H protein [Nitrosococcus watsonii C-113]
          Length = 130

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           IP  L Y ++HEWIRQEG G LTVGITD  Q+ LG +VYV+ P VG+ +R G +  V+ES
Sbjct: 4   IPAELKYTKSHEWIRQEGQGDLTVGITDQAQEMLGDIVYVELPEVGTTVRAGVECMVIES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQ-WIFRLRPTETFDVSQFLDAAAYT 121
            K ASDV+APV GEVI VNT L + PE IN   Y++ W+FRLRP+ T D+ + LDA  Y 
Sbjct: 64  VKAASDVYAPVEGEVIEVNTSLTDQPELINQKSYDEGWLFRLRPSNTADLDRLLDAKGYA 123

Query: 122 KMIG 125
            MI 
Sbjct: 124 DMIA 127


>ref|YP_610711.1| glycine cleavage system protein H [Pseudomonas entomophila L48]
 emb|CAK17928.1| glycine cleavage complex protein H, carrier of aminomethyl moiety
           via covalently bound lipoyl cofactor [Pseudomonas
           entomophila L48]
          Length = 127

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 87/123 (70%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           IP  L +AE+HEW R E DGT+TVGI+D  Q  LG +V+V+   VG V   G  AGVVES
Sbjct: 4   IPADLRFAESHEWARLEADGTVTVGISDHAQQALGDVVFVELAEVGKVFAAGDAAGVVES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAYTK 122
            K ASD++APV GEVIAVN ELA++PE +N  PY  WIF+L+P++  ++ + LDAA Y  
Sbjct: 64  VKAASDIYAPVGGEVIAVNDELADSPELLNEEPYGAWIFKLKPSDKSELDKLLDAAGYKA 123

Query: 123 MIG 125
           +IG
Sbjct: 124 LIG 126


>ref|YP_004356941.1| glycine cleavage system H protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gb|AEA71937.1| glycine cleavage system H protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 127

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 87/123 (70%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           IP  L +AE+HEW R E DGT+TVGI+D  Q+ LG +V+V+   VG V   G  AGVVES
Sbjct: 4   IPAELRFAESHEWARLEADGTVTVGISDHAQEALGDVVFVELTEVGKVFGAGDQAGVVES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAYTK 122
            K ASD+++P+AGEVIAVN EL+ +PE +N  PY  WIF+L+P++  +V + LDAA Y  
Sbjct: 64  VKAASDIYSPIAGEVIAVNEELSGSPELLNSDPYGAWIFKLKPSDKAEVGKLLDAAGYKS 123

Query: 123 MIG 125
            IG
Sbjct: 124 AIG 126


>ref|YP_351155.1| glycine cleavage system protein H [Pseudomonas fluorescens Pf0-1]
 gb|ABA77164.1| glycine cleavage system H protein [Pseudomonas fluorescens Pf0-1]
          Length = 127

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 87/123 (70%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           IP  L +AE+HEW R E DGT+TVGI+D  Q+ LG +V+V+   VG V   G  AGVVES
Sbjct: 4   IPAELRFAESHEWARLEADGTVTVGISDHAQEALGDVVFVELAEVGKVFAAGDTAGVVES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAYTK 122
            K ASD+++PV GEVIAVN +LA +PE +N  PY  WIF+L+P++  ++ + LDAAAY  
Sbjct: 64  VKAASDIYSPVGGEVIAVNEDLAGSPEELNNDPYAAWIFKLKPSDKAELDKLLDAAAYKA 123

Query: 123 MIG 125
            IG
Sbjct: 124 AIG 126