BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0073.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153221.1| binding-protein-dependent transport systems ... 413 e-113 ref|YP_584082.1| putative peptide transporter permease subunit: ... 409 e-112 ref|YP_002942770.1| binding-protein-dependent transport systems ... 409 e-112 ref|ZP_08873747.1| binding-protein-dependent transport systems i... 393 e-107 ref|YP_547244.1| binding-protein-dependent transport systems inn... 387 e-105 >ref|YP_004153221.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU35110.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 300 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/280 (75%), Positives = 242/280 (86%), Gaps = 1/280 (0%) Query: 3 MSTLQATAATPVSALPLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWI 62 MST+ A++ T + PLPA +RSRG+WA+V R R+P+A+ AA+++L LI IAVF PW+ Sbjct: 1 MSTVLASSPTAAAVEPLPA-QRSRGYWASVWLRFRRDPVAVGAAIVVLLLIAIAVFGPWL 59 Query: 63 MPADPFATSMFTRLKPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGS 122 P+DP+ +SM RLKPIGT G FG+DELGRD+LSRL++G RLSLF+GITPVL AFV+G+ Sbjct: 60 APSDPYQSSMLKRLKPIGTEGLPFGSDELGRDMLSRLIVGARLSLFIGITPVLCAFVLGT 119 Query: 123 GIGILAGYAGGFINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIA 182 IGI+AGYAGG NT IMRTIDV YAFPSVLLAIALSG LGAG+VN+L SLTIVFIPQIA Sbjct: 120 VIGIVAGYAGGIANTLIMRTIDVFYAFPSVLLAIALSGTLGAGVVNSLISLTIVFIPQIA 179 Query: 183 RIAESVTTQVRRSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGL 242 R+AESVTTQVR DYV+AARASGA FTIVR HVLGNVLGPIFVY+TSLI+VSMILASGL Sbjct: 180 RVAESVTTQVRTRDYVEAARASGASPFTIVRVHVLGNVLGPIFVYATSLIAVSMILASGL 239 Query: 243 SFLGLGVKPPEPEWGLMLNTLRTAIYTQPWVAALPGAFIF 282 SFLGLGVKPPEPEWGLMLNTLRTAIY QPWVAALPGA IF Sbjct: 240 SFLGLGVKPPEPEWGLMLNTLRTAIYVQPWVAALPGAMIF 279 >ref|YP_584082.1| putative peptide transporter permease subunit: membrane component of ABC superfamily [Cupriavidus metallidurans CH34] gb|ABF08813.1| putative peptide transporter permease subunit: membrane component of ABC superfamily [Cupriavidus metallidurans CH34] Length = 295 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/265 (77%), Positives = 231/265 (87%), Gaps = 1/265 (0%) Query: 18 PLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMFTRLK 77 PLP +RS G+W V R++RN LAM+AA+IL+ L+ A+FAP +MPADP+A+S+ RLK Sbjct: 11 PLPV-ERSPGYWTTVCRRLLRNKLAMLAALILIVLVLTAIFAPALMPADPYASSILKRLK 69 Query: 78 PIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGGFINT 137 PIG GHL GTDELGRD+LSRLMLGGRLSLFMGITPVL AF+IGS IGI+AGYAGG+ NT Sbjct: 70 PIGFDGHLLGTDELGRDMLSRLMLGGRLSLFMGITPVLLAFLIGSTIGIVAGYAGGWTNT 129 Query: 138 AIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVRRSDY 197 IMR D+LYAFPSVLLAIALSG LGAG+ NAL SLTIVF+PQI R+AESVTTQVR ++ Sbjct: 130 VIMRLTDILYAFPSVLLAIALSGTLGAGVGNALLSLTIVFVPQIVRVAESVTTQVRNREF 189 Query: 198 VDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 257 VDAARASGA + TIVR HVL NVLGPIFVY+TSLISVSMILASGLSFLGLGVKPPEPEWG Sbjct: 190 VDAARASGASSLTIVRVHVLNNVLGPIFVYATSLISVSMILASGLSFLGLGVKPPEPEWG 249 Query: 258 LMLNTLRTAIYTQPWVAALPGAFIF 282 LMLNTLRTAIYTQPWVAALPGA IF Sbjct: 250 LMLNTLRTAIYTQPWVAALPGAMIF 274 >ref|YP_002942770.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS17504.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 305 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/265 (76%), Positives = 232/265 (87%) Query: 18 PLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMFTRLK 77 PLP +RSRG+W + R R+P+A+ AA+++L LIG+AVF PW+ PADP+A+SM RLK Sbjct: 20 PLPPMQRSRGYWTSALLRFTRDPVAIGAALVVLLLIGLAVFGPWLAPADPYASSMLKRLK 79 Query: 78 PIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGGFINT 137 PIGT G G+DELGRD+LSRL++G RLSLF+GITPV+ AFV+G+ IGI+AGYAGGF NT Sbjct: 80 PIGTEGLPLGSDELGRDMLSRLIVGARLSLFIGITPVICAFVLGTVIGIVAGYAGGFTNT 139 Query: 138 AIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVRRSDY 197 IMRTIDV YAFPSVLLAIALSG LGAG+VN+L SLTIVFIPQIAR+AESVTTQVR DY Sbjct: 140 LIMRTIDVFYAFPSVLLAIALSGTLGAGVVNSLISLTIVFIPQIARVAESVTTQVRTRDY 199 Query: 198 VDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWG 257 V+AARASGA FTIVR HVLGNVLGPIFVY+TSLI+VSMILASGLSFLGLGVKPPEPEWG Sbjct: 200 VEAARASGANPFTIVRVHVLGNVLGPIFVYATSLIAVSMILASGLSFLGLGVKPPEPEWG 259 Query: 258 LMLNTLRTAIYTQPWVAALPGAFIF 282 LMLNTLRTAIY QPWVAALPGA IF Sbjct: 260 LMLNTLRTAIYVQPWVAALPGAMIF 284 >ref|ZP_08873747.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter sp. At4] Length = 301 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/269 (75%), Positives = 234/269 (86%), Gaps = 2/269 (0%) Query: 16 ALP--LPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMF 73 ALP LPA RSRG+W+ R R+P+A+ AA++++ L+ +A+F PWI PADP+A SM Sbjct: 12 ALPDALPALPRSRGYWSGATRRFARDPVALGAALVIVLLLALALFGPWIAPADPYAASML 71 Query: 74 TRLKPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGG 133 RLKPIGT G G+DELGRD+LSRL++G RLSLF+GITPVL AFVIG+ IGILAGYAGG Sbjct: 72 QRLKPIGTEGLPLGSDELGRDMLSRLIVGARLSLFIGITPVLCAFVIGAAIGILAGYAGG 131 Query: 134 FINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVR 193 +NT IMR+IDV YAFPSVLLAIALSG LGAG+VN+L SL+IVF+PQIAR+AESV+TQVR Sbjct: 132 LVNTVIMRSIDVFYAFPSVLLAIALSGVLGAGVVNSLISLSIVFVPQIARVAESVSTQVR 191 Query: 194 RSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPE 253 DYV+AARASGAGAFTIVR HVLGNVLGPIFVY++SLI+VSMILASGLSFLGLGVKPPE Sbjct: 192 ARDYVEAARASGAGAFTIVRVHVLGNVLGPIFVYASSLIAVSMILASGLSFLGLGVKPPE 251 Query: 254 PEWGLMLNTLRTAIYTQPWVAALPGAFIF 282 PEWGLMLNTLRTAIY QPWVAALPGA IF Sbjct: 252 PEWGLMLNTLRTAIYVQPWVAALPGAMIF 280 >ref|YP_547244.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE42346.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] Length = 311 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/264 (75%), Positives = 226/264 (85%), Gaps = 1/264 (0%) Query: 19 LPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMFTRLKP 78 LPA +RSRG+W R V +P+A+ A +++L LI +A+F PW+ PADP+ SM RLKP Sbjct: 28 LPA-QRSRGYWTAAMLRFVHDPVAVGAVLVVLMLIAMAIFGPWLAPADPYDASMLKRLKP 86 Query: 79 IGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGGFINTA 138 IGT G G+DELGRD+LSRL++G RLSLF+GITPV+ AF GS IGI+AGYAGG +NTA Sbjct: 87 IGTAGLPLGSDELGRDMLSRLIMGARLSLFIGITPVILAFFTGSVIGIVAGYAGGIVNTA 146 Query: 139 IMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVRRSDYV 198 IMRTIDV YAFPSVLLAIALSG LGAG+VN+L SLTIVFIPQIAR+AESVTTQVR DYV Sbjct: 147 IMRTIDVFYAFPSVLLAIALSGVLGAGVVNSLISLTIVFIPQIARVAESVTTQVRGRDYV 206 Query: 199 DAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGL 258 +AARASGA AFTIVR HVLGNVLGPIFVY+TSLI+VSMILASGLSFLGLGVKPPEPEWGL Sbjct: 207 EAARASGANAFTIVRVHVLGNVLGPIFVYATSLIAVSMILASGLSFLGLGVKPPEPEWGL 266 Query: 259 MLNTLRTAIYTQPWVAALPGAFIF 282 MLNTLRTA+Y QPWVAALPG IF Sbjct: 267 MLNTLRTALYVQPWVAALPGVMIF 290