BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0072.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153222.1| binding-protein-dependent transport systems ... 251 5e-65 ref|YP_002942771.1| binding-protein-dependent transport systems ... 249 2e-64 ref|YP_547243.1| binding-protein-dependent transport systems inn... 247 1e-63 ref|ZP_01902530.1| binding-protein-dependent transport systems i... 245 4e-63 ref|ZP_08873748.1| binding-protein-dependent transport systems i... 239 3e-61 >ref|YP_004153222.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU35111.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 317 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 117/159 (73%), Positives = 137/159 (86%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M++YL+RRV+YA+PIM+GVA +CF+LVHIAPGDPLV+ILPPDAS DLQ QL ELYGFNRS Sbjct: 1 MLTYLLRRVIYAVPIMIGVALVCFLLVHIAPGDPLVSILPPDASADLQAQLRELYGFNRS 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 PEQF WVWRA+HGDLG SIA+ R VA EVF AVGNT +A +AT IGF G LFGFVA Sbjct: 61 LPEQFGMWVWRALHGDLGVSIASNRAVAGEVFTAVGNTLRLAVMATFIGFVLGCLFGFVA 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAM 159 GYFRNSW+D++AS SV+GVSVPHYWLGMV+VI+FSS + Sbjct: 121 GYFRNSWIDRLASMFSVLGVSVPHYWLGMVMVIVFSSQL 159 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 68/77 (88%), Positives = 73/77 (94%) Query: 157 SAMAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLN 216 +A+AVMGLQLGYLLGGSILIETVFSWPGTGFLLN AIFQRDLPLLQGTILVLA+FFV LN Sbjct: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLAMFFVVLN 300 Query: 217 LLVDILQTVFDPRIERA 233 LLVD+LQT+ DPRI RA Sbjct: 301 LLVDVLQTLLDPRIARA 317 >ref|YP_002942771.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS17505.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 317 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 116/159 (72%), Positives = 137/159 (86%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M++YL+RR++YA+PIM+GVA +CF+LVHIAPGDPLV+ILPPDAS DLQ QL ELYGFNRS Sbjct: 1 MLAYLLRRIVYAVPIMVGVALVCFLLVHIAPGDPLVSILPPDASADLQAQLRELYGFNRS 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 PEQF WVWRA+HGDLG SIA+ R VA EVF AVGNT +A +AT IGF G LFGFVA Sbjct: 61 LPEQFAMWVWRALHGDLGVSIASNRAVAGEVFTAVGNTLRLAVVATFIGFVLGCLFGFVA 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAM 159 GYFRNSW+D+ AS +SV+GVSVPHYWLGMV+VI+FSS + Sbjct: 121 GYFRNSWLDRFASMLSVLGVSVPHYWLGMVMVIVFSSQL 159 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/77 (89%), Positives = 73/77 (94%) Query: 157 SAMAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLN 216 +A+AVMGLQLGYLLGGSILIETVFSWPGTGFLLN AIFQRDLPLLQGTILVLALFFV LN Sbjct: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLN 300 Query: 217 LLVDILQTVFDPRIERA 233 LLVD+LQT+ DPRI RA Sbjct: 301 LLVDVLQTLLDPRIARA 317 >ref|YP_547243.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE42345.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] Length = 317 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/160 (72%), Positives = 135/160 (84%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M YL+ RVLYA+PIMLGVAF+CF LVH+APGDPL++ILPPDAS +LQ QL ELYGFNRS Sbjct: 1 MQRYLLSRVLYALPIMLGVAFVCFALVHLAPGDPLMSILPPDASAELQAQLRELYGFNRS 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 PEQF WVWRA+ GDLG SIA+ RPVA EV AVGNT +A +AT IGF G LFGFVA Sbjct: 61 LPEQFALWVWRALQGDLGVSIASNRPVATEVLTAVGNTLRLAVVATTIGFVLGCLFGFVA 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAMA 160 GYFRNSW+D++AS +SV+GVSVPHYWLGMV+VI+FSS +A Sbjct: 121 GYFRNSWIDRLASMLSVMGVSVPHYWLGMVMVIVFSSQLA 160 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/77 (87%), Positives = 71/77 (92%) Query: 157 SAMAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLN 216 +A+AVMGLQLGYLLGGSILIETVFSWPGTGFLLN AIFQRDLPLLQGTILVLALFFV LN Sbjct: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVLLN 300 Query: 217 LLVDILQTVFDPRIERA 233 LVD+LQT+ DPRI R Sbjct: 301 FLVDVLQTLLDPRIART 317 >ref|ZP_01902530.1| binding-protein-dependent transport systems inner membrane component [Roseobacter sp. AzwK-3b] gb|EDM72113.1| binding-protein-dependent transport systems inner membrane component [Roseobacter sp. AzwK-3b] Length = 317 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 122/200 (61%), Positives = 156/200 (78%), Gaps = 3/200 (1%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 MIS+++RRV+Y +PIMLGV+ +CF LVHI+PGDPLV+ILPPDASV+LQ+Q+M +YGF+RS Sbjct: 1 MISFILRRVVYTIPIMLGVSLVCFALVHISPGDPLVSILPPDASVELQEQMMAIYGFDRS 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 YPEQF W+ A+ GDLG+SIATGRPVA EVF AVGNT ++A AT+IGF G LFGFVA Sbjct: 61 YPEQFMRWLALAVQGDLGNSIATGRPVATEVFNAVGNTLILAVTATIIGFTLGGLFGFVA 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAMAVMGLQLGYLLGGSILIETVF 180 GYFR+SW+DK+A+ ISV+GVSVPHYWLGMV+VIIFS + + G GGS + V+ Sbjct: 121 GYFRDSWIDKLATAISVIGVSVPHYWLGMVMVIIFSVELRWLP-ATGAGPGGS--SQWVW 177 Query: 181 SWPGTGFLLNQAIFQRDLPL 200 W +L+ AI +P+ Sbjct: 178 DWEHMQYLILPAITMSVIPM 197 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 65/76 (85%), Positives = 71/76 (93%) Query: 157 SAMAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLN 216 +A+AVMGLQLGYLLGGSILIETVFSWPGTGFLL QAIFQRDLPLLQGTILVLA+FFV LN Sbjct: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLGQAIFQRDLPLLQGTILVLAMFFVILN 300 Query: 217 LLVDILQTVFDPRIER 232 LLVD+ QT DPR++R Sbjct: 301 LLVDVAQTALDPRLQR 316 >ref|ZP_08873748.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter sp. At4] Length = 317 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 132/159 (83%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M SYL+RRV A+PIM+GVAFLCF+LVH+APGDPLV+ILPPDAS +LQ QL LYGFNRS Sbjct: 1 MFSYLLRRVCQAIPIMVGVAFLCFVLVHLAPGDPLVSILPPDASAELQAQLRVLYGFNRS 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 PEQF WVWRA+HGDLG SIA+ R VA EV AVGNT +A +AT IGF G LFGFVA Sbjct: 61 LPEQFGLWVWRALHGDLGVSIASNRAVAGEVLNAVGNTLRLALVATAIGFVLGCLFGFVA 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAM 159 GYFR SW+D+ AS +SV+GVSVPHYWLGMVLVI+FSS + Sbjct: 121 GYFRGSWIDRAASTLSVLGVSVPHYWLGMVLVIVFSSQL 159 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/77 (89%), Positives = 73/77 (94%) Query: 157 SAMAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLN 216 +A+AVMGLQLGYLLGGSILIETVFSWPGTGFLLN AIFQRDLPLLQGTILVLALFFV LN Sbjct: 241 TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNAAIFQRDLPLLQGTILVLALFFVLLN 300 Query: 217 LLVDILQTVFDPRIERA 233 LLVD+LQT+ DPRI RA Sbjct: 301 LLVDVLQTLLDPRIARA 317