BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0070.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_584080.1| PepT family ABC transporter periplasmic protein... 430 e-118 ref|YP_547242.1| extracellular solute-binding protein [Polaromon... 419 e-115 ref|YP_002942772.1| family 5 extracellular solute-binding protei... 414 e-114 ref|YP_725977.1| ABC transporter periplasmic protein [Ralstonia ... 405 e-111 ref|YP_004685337.1| peptide ABC transporter permease [Cupriavidu... 399 e-109 >ref|YP_584080.1| PepT family ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF08811.1| ABC-type transporter, periplasmic component: PepT family [Cupriavidus metallidurans CH34] Length = 586 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/267 (78%), Positives = 232/267 (86%), Gaps = 1/267 (0%) Query: 9 ITLACTLAFGLLTSVGVHAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPMYDSLTQW 68 ++ A TL+ L + AEKVLRI MTA DIPRTLGQPDQGFEGNRFTGIPMYD+LTQW Sbjct: 46 VSAAVTLSLLALPGAAM-AEKVLRIGMTAADIPRTLGQPDQGFEGNRFTGIPMYDALTQW 104 Query: 69 DLSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAKVLDK 128 DLSK++ S +IPDLA W VD K+KT+W FKLRPGVKFHDGS FNADAVVWNV KVLDK Sbjct: 105 DLSKSNGPSLLIPDLATEWKVDDKNKTEWTFKLRPGVKFHDGSPFNADAVVWNVNKVLDK 164 Query: 129 DAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQWAKK 188 A FDPSQVGVTASRMPTLR+AKKIDD+TV+L TSEPDSFLP N++NLFMASP QW KK Sbjct: 165 TAKQFDPSQVGVTASRMPTLRSAKKIDDMTVQLVTSEPDSFLPYNVSNLFMASPTQWEKK 224 Query: 189 LAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYWDAKRRPQI 248 AAVP SVT+ AER+KQAW AFAADASGTGPFKMT+FVPRERLELA+NP YWD+KR P+I Sbjct: 225 YAAVPASVTEPAERSKQAWVAFAADASGTGPFKMTRFVPRERLELAKNPAYWDSKRVPKI 284 Query: 249 DKVVMLPLPEANSRTAALLSGQVDWIE 275 DKVVMLP+PEAN+RTAALLSGQVDWIE Sbjct: 285 DKVVMLPMPEANARTAALLSGQVDWIE 311 >ref|YP_547242.1| extracellular solute-binding protein [Polaromonas sp. JS666] gb|ABE42344.1| extracellular solute-binding protein, family 5 [Polaromonas sp. JS666] Length = 566 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/253 (80%), Positives = 223/253 (88%) Query: 23 VGVHAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPMYDSLTQWDLSKADKASEVIPD 82 V + EK LRIAMTA DIPRTLGQPDQGFEGNRFTGIP+YDSLTQWDLSKA+ S +I Sbjct: 39 VALAQEKTLRIAMTAADIPRTLGQPDQGFEGNRFTGIPIYDSLTQWDLSKANAPSVLIAG 98 Query: 83 LAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAKVLDKDAPNFDPSQVGVTA 142 LA SWAVDAKDKTKW+FKLRPGVKFHDGSAFNADAVVWNVAKV DK+AP FDPSQVGVTA Sbjct: 99 LATSWAVDAKDKTKWVFKLRPGVKFHDGSAFNADAVVWNVAKVFDKEAPQFDPSQVGVTA 158 Query: 143 SRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQWAKKLAAVPGSVTDKAER 202 SRMPTLR+A+KIDD+TVE TTSEPDSFLPINLTNLFMASP QW KL AVP SVT AER Sbjct: 159 SRMPTLRSARKIDDMTVEFTTSEPDSFLPINLTNLFMASPAQWDAKLKAVPASVTAPAER 218 Query: 203 AKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYWDAKRRPQIDKVVMLPLPEANSR 262 +K AW AFAAD +G+GPFK+T+FV RERLELA + YWDA+R P+IDKVVMLP+PEAN+R Sbjct: 219 SKAAWTAFAADPAGSGPFKVTRFVARERLELAAHKTYWDARRVPKIDKVVMLPMPEANAR 278 Query: 263 TAALLSGQVDWIE 275 TAALL GQVDWIE Sbjct: 279 TAALLGGQVDWIE 291 >ref|YP_002942772.1| family 5 extracellular solute-binding protein [Variovorax paradoxus S110] gb|ACS17506.1| extracellular solute-binding protein family 5 [Variovorax paradoxus S110] Length = 552 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/274 (75%), Positives = 232/274 (84%), Gaps = 6/274 (2%) Query: 3 LTKP-SAITLACTLAFGLLTSVGVHAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPM 61 + KP +A + TLAF + + EK LRIAMTA DIPRTLGQPDQGFEGNRFTGIP+ Sbjct: 9 ILKPLAACAVLATLAFA---TPALAQEKTLRIAMTAADIPRTLGQPDQGFEGNRFTGIPI 65 Query: 62 YDSLTQWDLSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWN 121 YDSLTQWDLSKAD S +IP LA SWAVDAKDKT+W+FKLRPGVKFHDGSAFNADAVVWN Sbjct: 66 YDSLTQWDLSKADAPSVLIPALASSWAVDAKDKTRWVFKLRPGVKFHDGSAFNADAVVWN 125 Query: 122 VAKVLDKDAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMAS 181 V KVLDKDAP FDPSQVGVTASRMPTLRTA+KIDD+TVELTTSEPD+FLPINL+NLFMAS Sbjct: 126 VQKVLDKDAPQFDPSQVGVTASRMPTLRTARKIDDMTVELTTSEPDAFLPINLSNLFMAS 185 Query: 182 PLQWAKKLAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYWD 241 P QW KK A G+ A+++K AW AFAAD +G+GPFK+T+FV RERLELA N YWD Sbjct: 186 PAQWQKKFDAAAGAT--PADKSKAAWTAFAADPAGSGPFKVTRFVARERLELAANKTYWD 243 Query: 242 AKRRPQIDKVVMLPLPEANSRTAALLSGQVDWIE 275 AKR P+IDKVVMLP+PEAN+RTAALL GQVDWIE Sbjct: 244 AKRVPKIDKVVMLPMPEANARTAALLGGQVDWIE 277 >ref|YP_725977.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] emb|CAJ92609.1| ABC-type transporter, periplasmic component: PepT family [Ralstonia eutropha H16] Length = 558 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 205/270 (75%), Positives = 226/270 (83%), Gaps = 1/270 (0%) Query: 7 SAITLACTLAFGLLTSVGV-HAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPMYDSL 65 SA ++ LL G HA+KVLRI MTA DIPRTLGQPDQGFEGNRF+GIPMYD L Sbjct: 14 SAASVMSAAVLSLLALPGAAHADKVLRIGMTAADIPRTLGQPDQGFEGNRFSGIPMYDGL 73 Query: 66 TQWDLSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAKV 125 TQWDLS+ + S +IP LA W VDA DKT+W+FKLRPGVKFHDG+ FNADAVVWNV KV Sbjct: 74 TQWDLSRGNGPSLLIPGLATEWKVDAADKTRWVFKLRPGVKFHDGTPFNADAVVWNVGKV 133 Query: 126 LDKDAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQW 185 LDK A FDPSQVGVTASRMPTLRTAKKIDD TVEL TSEPDSFLP NLTNLFMASP QW Sbjct: 134 LDKTARQFDPSQVGVTASRMPTLRTAKKIDDFTVELVTSEPDSFLPYNLTNLFMASPTQW 193 Query: 186 AKKLAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYWDAKRR 245 KK AAVP SVTD ER+KQAW AFAADA+GTGPF+M++FVPRERLE+ RN +YWD KR Sbjct: 194 EKKFAAVPASVTDPVERSKQAWVAFAADAAGTGPFRMSRFVPRERLEVVRNAQYWDTKRV 253 Query: 246 PQIDKVVMLPLPEANSRTAALLSGQVDWIE 275 P+IDKVVM+P+PEAN+RTAALLSGQVDWIE Sbjct: 254 PKIDKVVMVPMPEANARTAALLSGQVDWIE 283 >ref|YP_004685337.1| peptide ABC transporter permease [Cupriavidus necator N-1] gb|AEI76856.1| ABC transport system permease protein PepT family [Cupriavidus necator N-1] Length = 558 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/248 (80%), Positives = 218/248 (87%) Query: 28 EKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIPMYDSLTQWDLSKADKASEVIPDLAVSW 87 +KVLRI MTA DIPRTLGQPDQGFEGNRF+GIPMYD LTQWDLS+ + S +IP LA W Sbjct: 36 DKVLRIGMTAADIPRTLGQPDQGFEGNRFSGIPMYDGLTQWDLSRGNGPSLLIPGLATEW 95 Query: 88 AVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAKVLDKDAPNFDPSQVGVTASRMPT 147 VDA DKT+W+FKLRPGVKFHDG+ FNADAVVWNV KVLDK A FDPSQVGVTASRMPT Sbjct: 96 KVDAADKTRWVFKLRPGVKFHDGTPFNADAVVWNVGKVLDKTARQFDPSQVGVTASRMPT 155 Query: 148 LRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQWAKKLAAVPGSVTDKAERAKQAW 207 LRTAKKIDDLTVEL TSEPDSFLP NLTNLFMASP QW KK AAVP SVTD ER+KQAW Sbjct: 156 LRTAKKIDDLTVELVTSEPDSFLPYNLTNLFMASPTQWEKKFAAVPASVTDPVERSKQAW 215 Query: 208 AAFAADASGTGPFKMTKFVPRERLELARNPEYWDAKRRPQIDKVVMLPLPEANSRTAALL 267 AFAADA+GTGPF+M++ VPRERLE+ RN +YWDAKR P+IDKVVM+P+PEAN+RTAALL Sbjct: 216 VAFAADAAGTGPFRMSRLVPRERLEVVRNAQYWDAKRVPKIDKVVMVPMPEANARTAALL 275 Query: 268 SGQVDWIE 275 SGQVDWIE Sbjct: 276 SGQVDWIE 283