BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0055.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 323 5e-86 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 300 3e-79 ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 293 3e-77 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 278 2e-72 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 275 1e-71 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 185/377 (49%), Positives = 240/377 (63%), Gaps = 14/377 (3%) Query: 32 SGVTIYGIINPSLTYTDKVANATPGNPTGTGSRLSMDTAVAQGSRIGFKGVEDLGGGLKA 91 S VTIYGI++ + YT K +T G TGS+ S+++ + QGSR+GFKGVEDLGGGLKA Sbjct: 22 SSVTIYGIVDTGIVYTSKALTSTGG----TGSKFSINSGIIQGSRLGFKGVEDLGGGLKA 77 Query: 92 LFTLENGFNADTGALAQGG----LFFGRTAIVGLSGSLGTIHLGRQKDYIDDLAPYNGAL 147 LF LE GFN DTG L QG F R ++VGL G+ G++ LGRQ D +DD++ + Sbjct: 78 LFQLEAGFNNDTGGL-QGDKGTTTLFRRKSVVGLGGNFGSVLLGRQTDILDDVSQWTSVQ 136 Query: 148 DFGSVVNNIHALNLDRTQGSRVNNSVRYNSPVFGGVTLSALYGFGEQAGSTGAGQSFGIG 207 DFG V ++ NLDR +G+R NNS+RYN+P G T S +YGFGE AG T AGQSFG G Sbjct: 137 DFGGVTGSV-GHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIYGFGETAGQTSAGQSFGAG 195 Query: 208 GSYNNGPLSFGAAYFQNKLTANNTFTGSSDSGIAPGAVTGSIASTSLKTFLVGGSYKLGD 267 Y NGPL AAY+Q+KL + S +G +G T+LKTF +G SY+ G Sbjct: 196 AQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVANFSGKSGDTALKTFSIGASYQAGP 255 Query: 268 VRLYGSYSQVKQPLAVAAGAAMTGFTGAAGAAFTFGGVNNSKVDLIDFGVNYNVTATTQL 327 RLYG++S+ KQPLA ++ +A TG +FT G NN+K D+ + GVNY VTA L Sbjct: 256 ARLYGNWSRTKQPLATSSNSATTGILQP--GSFTVGSFNNTKADIFELGVNYAVTAPLHL 313 Query: 328 LANFVTTRSKFVGASSD-GKATQVSLGVDYFLSKRTDLYLFYANIRSSDMFNPGLY-VAP 385 LA+ + F A +D GK TQ +LG DYFLSKRTDLY F +N+R+ D NPG+Y + Sbjct: 314 LASVQYNKLTFADAGADKGKLTQFNLGTDYFLSKRTDLYAFVSNLRAKDAVNPGVYGDSL 373 Query: 386 GGSNTQNVLTAGIRHKF 402 G + Q + GIRHKF Sbjct: 374 GDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 192/414 (46%), Positives = 241/414 (58%), Gaps = 56/414 (13%) Query: 1 MKKTALAMSLPLCFAVLSFAAAAQAQTTDASSGVTIYGIINPSLTYTDKVANATPGNPTG 60 MKKT A++ A+ A AQAQT VTIYG+I+ LTYT KV P N Sbjct: 1 MKKTVFALA-----ALGLIGANAQAQTN-----VTIYGVIDAGLTYTSKVG---PKND-- 45 Query: 61 TGSRLSMDTAVAQGSRIGFKGVEDLGGGLKALFTLENGFNADTGALAQGGLFFGRTAIVG 120 SR+S+D+ SRIGF+G EDLGGGLKA+F LENGFNAD G+LA F R A+VG Sbjct: 46 --SRISLDSGDMATSRIGFRGTEDLGGGLKAIFQLENGFNADDGSLATASTLFDRKAVVG 103 Query: 121 LSGSLGTIHLGRQKDYIDDL-APYNGALDFGSVVNNI---HALNLDRTQGSRVNNSVRYN 176 LSGS GT+ LGRQ DY+DD+ + Y FGS N I H NLDR G R NNS+RY+ Sbjct: 104 LSGSFGTVTLGRQTDYLDDIGSKYTSVQTFGS--NGIKAGHFNNLDRVGGVRANNSIRYD 161 Query: 177 SPVFGGVTLSALYGFGEQAGSTGAGQSFGIGGSYNNGPLSFGAAYFQNKLTANNTFTGSS 236 S G T S YGFGE AG T AGQSFG+ G+Y NGP G YFQ KL A+ Sbjct: 162 SANLSGFTGSLFYGFGEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAAD------- 214 Query: 237 DSGIAPGAVTGSIASTSLKTFLVGGSYKLGDVRLYGSYSQVKQPLAVAAGAAMTGFTGAA 296 A+ T LKTF +G SY+ G ++YG++SQ K+PLA A A TG Sbjct: 215 -------ALPSKAGDTDLKTFTLGASYQAGPAKIYGAWSQTKRPLAAA--LAATGLVNIT 265 Query: 297 GAAFTFGGVNNSKVDLIDFGVNYNVTATTQLLANFVTTR---SKFVGASSDGKATQVSLG 353 A +K ++ D GV+Y+++ LLA+ + R S+ S+ GK TQ++LG Sbjct: 266 TA---------TKANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLG 316 Query: 354 VDYFLSKRTDLYLFYANIRSSDMFNPGLY-----VAPGGSNTQNVLTAGIRHKF 402 VDY+LSKRTDLY Y N R++D+ NPG+ AP +QNV G+RHKF Sbjct: 317 VDYYLSKRTDLYALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 183/424 (43%), Positives = 250/424 (58%), Gaps = 41/424 (9%) Query: 1 MKKTALAMSLPLCFAVL-SFAAAAQAQTTDASSGVTIYGIINPSLTYTDKVANATPGNPT 59 MKK+ LA+ AVL +FA AA AQ SS +TIYG I+ SLTYT+K+A + Sbjct: 1 MKKSLLAL------AVLGAFAGAAHAQ----SSSITIYGAIDASLTYTNKIAT----DGK 46 Query: 60 GTGSRLSMDTAVAQGSRIGFKGVEDLGGGLKALFTLENGFNADTGALAQGGLFFGRTAIV 119 TGS ++++ + +GSR+G KG EDLGGGLKA+FTLENGFN DTG QG L +GR V Sbjct: 47 NTGSLTAVESGLVKGSRLGIKGSEDLGGGLKAVFTLENGFNVDTGEAGQGKLMWGRQTTV 106 Query: 120 GLSGSLGTIHLGRQKDYIDDLAPYNGALDFGSVVNNIHALNLDRTQGSRVNNSVRYNSPV 179 GLSG+ GT+ +GRQ D ++D+ A FG V +H+ LDRT G R+NNS+RYNSP Sbjct: 107 GLSGNFGTVLVGRQNDPLNDIGGIASAGGFG-VPGTVHSKGLDRTDGQRLNNSIRYNSPN 165 Query: 180 FGGVTLSALYGFGEQAGSTGAGQSFGIGGSYNNGPLSFGAAYFQNKLTANNTFTGSSDSG 239 F G++ S +YGFGEQ G G+S G+G Y NGPLS G YFQ+K+ + GSSD Sbjct: 166 FNGLSFSGIYGFGEQVGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGS--DGSSDVN 223 Query: 240 IAPGAVTGS-----IASTSLKTFLVGGSYKLGDVRLYGSYSQVKQPL------------- 281 A A G+ T LKT+ + +Y+ G ++YG++S V+ PL Sbjct: 224 -AKAACNGAGEKDHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNF 282 Query: 282 -AVAAGAAMTGFTGAAGAAFTFGGVNNSKVDLIDFGVNYNVTATTQLLANFVTTRSKFVG 340 A+ TG+ + AF+ GG N+ D G++Y + + L++ TR+KFVG Sbjct: 283 GAMYDAKTGTGYNPSDATAFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVG 342 Query: 341 ASSDGKATQVSLGVDYFLSKRTDLYLFYANIRSSDMFNPGLYV--APGGSNTQNVLTAGI 398 A+S G+ Q++LG Y LSKRT Y N+RSSDM+N GL PG +Q ++ G+ Sbjct: 343 AAS-GRLLQLNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGL 401 Query: 399 RHKF 402 H F Sbjct: 402 IHTF 405 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 181/416 (43%), Positives = 239/416 (57%), Gaps = 43/416 (10%) Query: 1 MKKTALAMSLPLCFAVLSFAAAAQAQTTDASSGVTIYGIINPSLTYTDKVANATPGNPTG 60 MKK+ LA+ AVL A A A S VTIYGI++ + Y+ KV Sbjct: 1 MKKSLLAL------AVLGAFAGAAQ----AQSSVTIYGIVDTGIAYSSKVGYTDANGNAA 50 Query: 61 TGSRLSMDTAVAQGSRIGFKGVEDLGGGLKALFTLENGFNADTGALAQGGL------FFG 114 TGS+ +++ V QGSRIGFKGVEDLGGGL A+F LE GF +D G L QG F Sbjct: 51 TGSKFGINSGVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGL-QGSDAVTSSNLFR 109 Query: 115 RTAIVGLSGSLGTIHLGRQKDYIDDLAPYNGALDFGSVVNNIHALNLDRTQGSRVNNSVR 174 R ++VGLSG GT+ LGRQ D+ D ++ Y DFG VV N +L+R QG+R NNSV Sbjct: 110 RKSVVGLSGGFGTVLLGRQTDFADTISAYTAVADFGGVVAN-SGSSLNRLQGTRTNNSVS 168 Query: 175 YNSPVFGGVTLSALYGFGEQAGSTGAGQSFGIGGSYNNGPLSFGAAYFQNKLTANNTFTG 234 Y + G T + +YGFGEQAG T AGQ++GIGG Y+NGPL G Y+Q+K A +T Sbjct: 169 YTTANLSGFTGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSK--AGST--- 223 Query: 235 SSDSGIAPGAVT-------GSIASTSLKTFLVGGSYKLGDVRLYGSYSQVKQPLAVAAGA 287 SD+ + P A G +T+LK+ V SY+ G R+Y +YS+VKQ L Sbjct: 224 PSDTSLIPAAGATNANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTV 283 Query: 288 AMTGFTGAAGAAFTFGGVNNSKVDLIDFGVNYNVTATTQLLANFVTTRSKFVGASSDGKA 347 A N K D + G Y+++ + +LLA +R+ F G ++ GK Sbjct: 284 ATATL------------ANAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKL 331 Query: 348 TQVSLGVDYFLSKRTDLYLFYANIRSSDMFNPGLYVAPGGSN-TQNVLTAGIRHKF 402 TQ+SLG DYFLSKRTDLY F +N+R+SD+ NPG+ GS+ +Q + GIRHKF Sbjct: 332 TQISLGADYFLSKRTDLYAFVSNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 176/417 (42%), Positives = 235/417 (56%), Gaps = 42/417 (10%) Query: 1 MKKTALAMSLPLCFAVLSFAAAAQAQTTDASSGVTIYGIINPSLTYTDKVANATPGNPTG 60 MKK+ LA+ AVL A A A S VTIYGI++ + Y KVA T G Sbjct: 1 MKKSLLAL------AVLGAFAGAAQ----AQSSVTIYGIVDTGVVYQSKVATPTGG---- 46 Query: 61 TGSRLSMDTAVAQGSRIGFKGVEDLGGGLKALFTLENGFNADTGAL---AQGGLFFGRTA 117 TGS+ S+++ V QGSRIGFKG EDLGGGL A+F LE GF+ DTGAL F R + Sbjct: 47 TGSKFSLNSGVIQGSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKS 106 Query: 118 IVGLSGSLGTIHLGRQKDYIDDLAPYNGALDFGSVVNNIHALNLDRTQGSRVNNSVRYNS 177 +VGL+G+ G++ LGRQ D+ D ++ Y DFG NLDR +G+R NNS+ Y + Sbjct: 107 VVGLAGNFGSVLLGRQTDFADTISSYTSVQDFGGWTG-AAGHNLDRLEGTRTNNSISYTT 165 Query: 178 PVFGGVTLSALYGFGEQAGSTGAGQSFGIGGSYNNGPLSFGAAYFQNKL----------- 226 G T + +YGFGE AG T AGQ+FG+GG Y+NGPL G Y+Q+K Sbjct: 166 ANLNGFTGNLMYGFGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLLA 225 Query: 227 -TANNTFTGSSDSGIAPGAVTGSIASTSLKTFLVGGSYKLGDVRLYGSYSQVKQPLAVAA 285 T N FT +++G ST+ K V SY+ G R+YG++S+VKQ L A Sbjct: 226 ATGTNQFTNGTNNG-----------STAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQA 274 Query: 286 GAAMTGFTGAAGAAFTFGGVNNSKVDLIDFGVNYNVTATTQLLANFVTTRSKFVGASSDG 345 G A + +N K D+ + G Y+++ + +LLA TR++F G S Sbjct: 275 NLTAAGVGSLATISNRTLAASN-KADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKA 333 Query: 346 KATQVSLGVDYFLSKRTDLYLFYANIRSSDMFNPGLYVAPGGSNTQNVLTAGIRHKF 402 K TQVSLG DY+LSKRTDLY F A +++D+ NPG+ + G Q + GIRHKF Sbjct: 334 KLTQVSLGTDYWLSKRTDLYAFLAYSKATDLNNPGVADSSGTDGNQGAVAVGIRHKF 390