BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0053.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353551.1| LysR family transcriptional regulator [Janth...   175   2e-42
ref|YP_003777279.1| transcription regulator protein [Herbaspiril...   171   3e-41
ref|YP_004750768.1| transcriptional regulator [Collimonas fungiv...   166   2e-39
ref|YP_347486.1| LysR family transcriptional regulator [Pseudomo...   161   3e-38
ref|YP_004355367.1| LysR family transcriptional regulator [Pseud...   157   4e-37

>ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR90109.1| transcriptional regulator, LysR family [Janthinobacterium sp.
           Marseille]
          Length = 307

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 91/104 (87%)

Query: 36  FQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIV 95
           FQRSTR L+LTEAGERFL EVSGGL+ IQSAVANLASADGQPAG LK+SMGTGFGR YIV
Sbjct: 49  FQRSTRRLTLTEAGERFLAEVSGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIV 108

Query: 96  PLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEG 139
           PLLG FL RYPAI+PDW+FDNR VD+I EGFDAAIGGG  +  G
Sbjct: 109 PLLGDFLTRYPAITPDWHFDNRRVDMIAEGFDAAIGGGFELPPG 152


>ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65371.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 91/107 (85%)

Query: 36  FQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIV 95
           F RSTR LSLTEAGERFL+EV GGL +I+SAVANLASA GQPAG LKVSMGTGFGR+YIV
Sbjct: 49  FHRSTRKLSLTEAGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIV 108

Query: 96  PLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEGFDA 142
           PLLG FL RYP I PDW+F+NRPVDLI+EGFDAAI GG  ++ G  A
Sbjct: 109 PLLGEFLGRYPGIQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVA 155


>ref|YP_004750768.1| transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK59945.1| Transcriptional regulator [Collimonas fungivorans Ter331]
          Length = 307

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 102/142 (71%), Gaps = 5/142 (3%)

Query: 3   IRSSSRSTWSSVAANWSPCSARPSSQ-RRLTSGT----FQRSTRSLSLTEAGERFLREVS 57
           +RS+   ++S  A      SA       RL +G     F RSTRSL+LTEAGE FL E+ 
Sbjct: 11  VRSAEAGSFSEAARRLGMTSAAVGKNVARLETGLGVRLFHRSTRSLTLTEAGESFLHEIR 70

Query: 58  GGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPLLGGFLERYPAISPDWYFDNR 117
            GL+SIQSAV NLASA GQPAGVLKVSMGTGFGR Y+VPLL  FLE+YPAISPDW+FDNR
Sbjct: 71  DGLTSIQSAVDNLASAGGQPAGVLKVSMGTGFGRVYMVPLLAPFLEKYPAISPDWHFDNR 130

Query: 118 PVDLITEGFDAAIGGGXLITEG 139
            VDLI +GFDAAIGGG  +  G
Sbjct: 131 QVDLIAQGFDAAIGGGFELPPG 152


>ref|YP_347486.1| LysR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gb|ABA73497.1| putative LysR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 328

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 97/125 (77%), Gaps = 2/125 (1%)

Query: 28  QRRLTSGTFQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGT 87
           + RL    FQRSTR L+LTEAG+ FL EVSG L++IQ+AV NLASA GQPAG LKVSMGT
Sbjct: 56  EARLGVRLFQRSTRRLTLTEAGQLFLSEVSGSLTTIQNAVNNLASAGGQPAGTLKVSMGT 115

Query: 88  GFGREYIVPLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEGFDAAIRRI 147
            FGR YIVPLLG FL+R+PAI+PDW+FDNR VDLI +GFDAAIGGG  + +G  A  RR+
Sbjct: 116 VFGRLYIVPLLGEFLKRFPAINPDWHFDNRQVDLIGQGFDAAIGGGFELPQGVVA--RRL 173

Query: 148 VSCWR 152
               R
Sbjct: 174 TPAHR 178


>ref|YP_004355367.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gb|AEA70363.1| putative Transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 307

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 90/115 (78%)

Query: 28  QRRLTSGTFQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGT 87
           + R+    FQRSTRSL LTEAG+ FL EV    ++IQ+AVANLASA GQPAG LKVSMGT
Sbjct: 41  EARMGVRLFQRSTRSLRLTEAGQLFLGEVGSSFNTIQNAVANLASAGGQPAGTLKVSMGT 100

Query: 88  GFGREYIVPLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEGFDA 142
            FGR Y+VPLLG FL RYPAI+PDW+FDNR VDLI +GFDAAIGGG  + +G  A
Sbjct: 101 AFGRLYVVPLLGEFLRRYPAINPDWHFDNRQVDLIGQGFDAAIGGGFELPQGVVA 155