BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0043.p         (300 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGP43754.1| hypothetical protein AXXA_24385 [Achromobacter xy...    67   2e-09
ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspiril...    66   7e-09

>gb|EGP43754.1| hypothetical protein AXXA_24385 [Achromobacter xylosoxidans AXX-A]
          Length = 288

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 34/269 (12%)

Query: 4   VDPHQDNLADSL-DAALSATEKKNQQRAGKSPHTYALIDGVFDQKWGAALL-WQQSQAVN 61
           +DP   ++A +L DAA +  +          P  Y L+D  F  +    L  W  ++   
Sbjct: 9   IDPATPDVAQALHDAAWNHPDM---------PERYVLLDAAFSPRLPERLARWLDAED-- 57

Query: 62  VHCVRSLYTGS-RLEALEECAPFLVIIE--PEKRLSALQGLLSRTDHKPMLTFVQSPLDL 118
            +C  SLY G  + E L++ AP+L+ +   P  R      L+  T  KPM++ + +   L
Sbjct: 58  -YC--SLYAGRYQGEGLDQVAPYLLRLSWVPALRAPVCDKLMRLTRGKPMMSLLTTSAPL 114

Query: 119 FALQRHLVRFSQIETPDT--LVFPLRFADSICLPEILDVFTLEQRAAILSGVTAWHYVDR 176
             L  HL R  QIE  +T    + LR AD+     +L+VF   QR  +L+G++ W YVDR
Sbjct: 115 DQLADHLRR--QIEAVNTEGKAYLLRLADTRSFAALLEVFAPAQRQRLLAGISHWSYVDR 172

Query: 177 RGGVVTIAGTCN-DADLYVTPMYGEIDRIPFSDSQYVQLFDSSEADGILNALSAKHMPIF 235
           RG +    G    D D    P     D       Q   L   +  D IL  +  +  P+F
Sbjct: 173 RGALRVAQGDPRFDPDAPTEPYVIAAD-------QQRHLHLLALPDAILRFVQLR-APLF 224

Query: 236 KQVKV--SLLFQRVQTALQEMDRRNIKEE 262
             +    S  +Q +   ++ + RR +  E
Sbjct: 225 GALTCPPSTAYQCILEGVRRLARRGLDNE 253


>ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62283.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 45  DQKWGAALLWQQSQAVNVHC--------VRSLYTGSRLEALEECAPFLVIIE----PEK- 91
           D+  GA LL   +QA   H           SL+ G R EAL E AP L+ +     P + 
Sbjct: 20  DRGHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEALPEIAPLLISLSGLDAPRRE 79

Query: 92  RLSALQGLLSRTDHKPMLTFVQSPLDLFALQRHLVRFSQIETPDTLVFPLRFADSICLPE 151
           RL++    L+ +   P L++ +SPL L A   HL  F Q+   D     +R+ D+  LP 
Sbjct: 80  RLASWISQLAFS--APCLSWYESPLPLQAFAAHLRNFHQVGLSDGQAMMMRWYDTRILPI 137

Query: 152 ILDVFTLEQRAAILSGVTAWHYVDRRGGVVTIAGTCNDADLYVTPMYGEIDRIPFSDSQY 211
                T EQR+    G+ +  YVDR G   TI    ++A     P   +   +   D Q+
Sbjct: 138 WAQALTPEQRSLFTGGMFSIAYVDRFGEAKTIH-QASEAGPPSAPPPLDQPLVTLDDQQF 196

Query: 212 VQLFDSSEADGILNAL 227
             L D+ + D ++N L
Sbjct: 197 GLLVDAGDLDTLVNHL 212