BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0036.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775935.1| transmembrane sensor histidine kinase transc... 191 5e-47 ref|YP_002495412.1| histidine kinase [Methylobacterium nodulans ... 131 9e-29 ref|YP_001767080.1| integral membrane sensor signal transduction... 123 2e-26 ref|YP_004360300.1| Periplasmic sensor signal transduction histi... 98 8e-19 ref|YP_002912034.1| Periplasmic sensor signal transduction histi... 95 9e-18 >ref|YP_003775935.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64027.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 1 LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60 LL+ + ++E R+ HL LR RTR LGALVNQLINHAMVQHR+D++ +DL +LVR +M Sbjct: 269 LLATEDNEEKRQRHLTLLRERTRNLGALVNQLINHAMVQHRNDSSLQARIDLGELVRSQM 328 Query: 61 ADMLSHQERLL-DLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119 ++LS++ R DL+++ P PCLI GDAISL EA+KN+L NALQYGA L V+LE Sbjct: 329 TEVLSNRSRTPHDLSLDVPPLPCLIRGDAISLGEAIKNILDNALQYGAPGLLQVRLESDG 388 Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGERMGASLGLS 160 + LR IDDGPGIP ADWER+RKPFSPR +RMGASLGLS Sbjct: 389 QRHWLRFIDDGPGIPAADWERLRKPFSPRGEQRMGASLGLS 429 >ref|YP_002495412.1| histidine kinase [Methylobacterium nodulans ORS 2060] gb|ACL55109.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 461 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 1 LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60 LLSA+ D+ RR + R++ RT +LG L NQL+NHAMV HR+ + VDL + R+ + Sbjct: 265 LLSAEGDEARRREQVIRVQERTAELGRLTNQLLNHAMVIHRARSIPLAPVDLGAIARRTL 324 Query: 61 ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119 D + R +D E P++P I GD I+LREA+ N++ N +++GA L V+ R+ Sbjct: 325 IDAIPLAGTRPIDFGYEGPDEPLPIRGDPIALREALANLIHNGIKHGAPGRLTVRTRRER 384 Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGERMGASLGLS 160 +I + V+DDG GIP A+W R+R+PF SG +G+ LGL+ Sbjct: 385 DRITVEVVDDGAGIPAAEWRRVREPFQAASGGAIGSGLGLA 425 >ref|YP_001767080.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gb|ACA14646.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 462 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 1 LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60 LLSA+ D + RR + R++ RT +LG L NQL+NHAMV HR+ VDLA + RQ + Sbjct: 265 LLSAEDDPKRRRAQVSRVQARTAELGRLTNQLLNHAMVIHRARAVPLAPVDLAGIARQTL 324 Query: 61 ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119 D + RL+D+ + P++ I GD I+LREA+ N++ NAL++GA L V+ R+ Sbjct: 325 IDAIPLSGGRLVDIGYDGPDEALPIRGDPIALREALANLIHNALKHGAPHRLTVRTRREP 384 Query: 120 TQIELRVIDDGPGIPEADWERIRKPF 145 ++ + V+DDG GIP A+W R+R+PF Sbjct: 385 GRVSVEVVDDGAGIPAAEWGRVREPF 410 >ref|YP_004360300.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] gb|AEA60344.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] Length = 472 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 6/184 (3%) Query: 1 LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60 +LS + D +R L+ LR +G L QL+NHAMV HR++ + +DL L ++ + Sbjct: 266 MLSNESDAARQRARLETLRATCSDVGRLTGQLLNHAMVIHRTEVVPLQPIDLVALAKEVL 325 Query: 61 ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119 + ER + ++++A I GDAISL+EA+ NVL NAL +G A+ + V ++ Sbjct: 326 GRTIPLAGERDVQVSLDARLDDATIDGDAISLQEALSNVLHNALHHGMANQIVVTIDGTA 385 Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGE----RMGASLGLSPRSGERMGASLGSNC 175 Q+ L V D+G GIP W+ + +PF G+ R G+ LGL+ E M A G Sbjct: 386 EQLILTVTDNGTGIPREHWDAVMRPFVRLDGKGAERRDGSGLGLAIVK-EVMDAHGGQVS 444 Query: 176 CACP 179 A P Sbjct: 445 FAVP 448 >ref|YP_002912034.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia glumae BGR1] gb|ACR29330.1| Periplasmic sensor signal transduction histidine kinase [Burkholderia glumae BGR1] Length = 468 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 1 LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60 +LS + D +R L LR +G L QL+NHAMV HR++ + VDL L ++ + Sbjct: 266 MLSHEPDAARQRARLATLRATCSDVGRLTGQLLNHAMVIHRTEVVPLQPVDLVALAKEGL 325 Query: 61 --ADMLSHQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERK 118 A L+H ER + +++E I GD ISL+EA++N+L NAL +G A+ + V L Sbjct: 326 GRAIPLAH-ERDVQVSLEIGRADATIDGDPISLQEALQNLLHNALHHGVATQITVTLGGS 384 Query: 119 ETQIELRVIDDGPGIPEADWERIRKPFSPRSGE----RMGASLGLSPRSGERMGASLGSN 174 + Q+ L V D+G GI W+ + +PF GE R G+ LGL+ E M A G Sbjct: 385 DGQVTLTVADNGRGIAREHWDAVLRPFVRLDGEGAQRRDGSGLGLAIVK-EVMDAHGGQV 443 Query: 175 CCACPRWRKWNCSACRTRRFSSSS 198 A P+ + + R +++ Sbjct: 444 RFAFPQAGGFAVTLAFARSGGAAA 467