BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0032.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_951315.1| LuxR family transcriptional regulator [Geobacte... 233 1e-59 gb|ADI83089.1| helix-turn-helix transcriptional response regulat... 228 4e-58 ref|YP_902373.1| two component LuxR family transcriptional regul... 226 2e-57 ref|ZP_06967908.1| two component transcriptional regulator, LuxR... 204 7e-51 ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, peri... 201 8e-50 >ref|NP_951315.1| LuxR family transcriptional regulator [Geobacter sulfurreducens PCA] gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 215 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/211 (55%), Positives = 154/211 (72%), Gaps = 5/211 (2%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 I++ IADDH +VRDGL ++L+ SDI V+G DGR+A+ E L P+VV+MDI MP LN Sbjct: 3 IKVLIADDHAVVRDGLTMILESQSDIAVIGQAGDGREAIAMAESLKPNVVVMDITMPELN 62 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 GIEAA L+ PA K ++LSM+ T EH++RALQAGARGYLLK SAG+E+ +A+R V G Sbjct: 63 GIEAARLIAREQPATKIVILSMHDTLEHVYRALQAGARGYLLKESAGAEVTDAVRTVMRG 122 Query: 125 QRYL---SQKISDAVVDDYLLESRAAGPLDALSTREREVLQLVAEGHSSAQVAAMLSLSP 181 RY S+ SD + PLD+LS REREVLQLV EG S+++A +LSLSP Sbjct: 123 HRYFGRGSRLPSD--MHRSACADLPKSPLDSLSQREREVLQLVVEGKKSSEIAEILSLSP 180 Query: 182 KSIETYRSRLMQKIGVSDLPSLVKFSIHHGL 212 KSIETYRSRLM K+G++++PSLVKF++ HG+ Sbjct: 181 KSIETYRSRLMIKLGITNIPSLVKFALLHGV 211 >gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 214 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/211 (54%), Positives = 152/211 (72%), Gaps = 5/211 (2%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 I++ I DDH +VRDGL ++L+ SDI V+G DGR+A+ L P+VV+MDI MP LN Sbjct: 2 IKVLIVDDHAVVRDGLTMILESQSDIAVIGQAGDGREAIAMAGSLKPNVVVMDITMPELN 61 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 GIEAA L+ PA K ++LSM+ T EH++RALQAGARGYLLK SAG+E+ +A+R V G Sbjct: 62 GIEAARLIAREQPATKIVILSMHDTLEHVYRALQAGARGYLLKESAGAEVTDAVRTVMRG 121 Query: 125 QRYL---SQKISDAVVDDYLLESRAAGPLDALSTREREVLQLVAEGHSSAQVAAMLSLSP 181 RY S+ SD + PLD+LS REREVLQLV EG S+++A +LSLSP Sbjct: 122 HRYFGRGSRLPSD--MHRSACADLPKSPLDSLSQREREVLQLVVEGKKSSEIAEILSLSP 179 Query: 182 KSIETYRSRLMQKIGVSDLPSLVKFSIHHGL 212 KSIETYRSRLM K+G++++PSLVKF++ HG+ Sbjct: 180 KSIETYRSRLMIKLGITNIPSLVKFALLHGV 210 >ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 208 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 151/208 (72%), Gaps = 6/208 (2%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 +RI IADDH IVR+GL ++L+ S + V G DGR A+ + E L PDVV+MDIAMP LN Sbjct: 3 VRILIADDHAIVREGLTMILE-SSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELN 61 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 GI+A ++ P VK I+LSM+ T+EH+FRA+QAGAR YLLK SAGS LV+A+R V G Sbjct: 62 GIDATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVRAVIRG 121 Query: 125 QRYLSQKISDAVVDDYLLESRAAGPLDALSTREREVLQLVAEGHSSAQVAAMLSLSPKSI 184 + Y + VD + PLD+LS REREV+QLV EG +SA++A +LSLSPKSI Sbjct: 122 ECYFGEG-----VDAPQAVAGFKSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSI 176 Query: 185 ETYRSRLMQKIGVSDLPSLVKFSIHHGL 212 ETYRSRLM K+GV ++P+LVKF++ HG+ Sbjct: 177 ETYRSRLMVKLGVGNIPALVKFALQHGI 204 >ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 97/213 (45%), Positives = 149/213 (69%), Gaps = 3/213 (1%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 IRI +ADDHTI+R GL +ML D+ VVG DG+QA++E ++L PD+V+MDI MP+LN Sbjct: 3 IRILLADDHTILRAGLKMMLNAQPDMEVVGEAQDGKQAIQETQRLQPDIVLMDITMPDLN 62 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 GIEA ++ +AP VK ++L+M+ E++F+AL+AGA GY+LK +A +EL+ A+ ++ SG Sbjct: 63 GIEATKQIKKIAPDVKILVLTMHEHDEYVFQALRAGASGYMLKEAADTELITALHVILSG 122 Query: 125 QRYLSQKISDAVVDDYLLESRAAGPLD---ALSTREREVLQLVAEGHSSAQVAAMLSLSP 181 Q YLS +V DYL S+ D +L+ RERE+L+LVAEG ++ Q+A L +SP Sbjct: 123 QFYLSPAAQSVMVGDYLQRSKTGEEKDSYSSLTEREREILKLVAEGFTNNQIAERLVISP 182 Query: 182 KSIETYRSRLMQKIGVSDLPSLVKFSIHHGLIS 214 K+++T+R+ +M K+ + LVK+++ GL+ Sbjct: 183 KTVDTHRTHIMDKLNLHSRAELVKYAMRRGLLE 215 >ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] Length = 219 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 149/218 (68%), Gaps = 10/218 (4%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 I++ +A+DHTIVR GL +L DI VVG +GR+A+K +E+L PDVV+MDI+MP LN Sbjct: 4 IKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPELN 63 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 G++A L+ P VK ++LSM++T+E+IF L+AGA GYL+K SA ++L+ AI +G Sbjct: 64 GMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHAG 123 Query: 125 QRYLSQKISDAVVDDYL-------LESRAAGPLDALSTREREVLQLVAEGHSSAQVAAML 177 +LS IS V+ +Y+ LE R LD LS REREVLQL+AEGH++ ++A L Sbjct: 124 DCFLSPSISKKVIKNYVQQKQGLSLEPRG---LDLLSAREREVLQLIAEGHANREIAGHL 180 Query: 178 SLSPKSIETYRSRLMQKIGVSDLPSLVKFSIHHGLISL 215 +SPK++E +R+ + +K+G++ L K++I GL+ L Sbjct: 181 YISPKTVEAHRNHIQKKLGLNGTAELTKYAIRKGLVEL 218