BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0028.p (139 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004417111.1| LysR family transcriptional regulator [Pusil... 129 1e-28 ref|YP_550874.1| LysR family transcriptional regulator [Polaromo... 125 3e-27 ref|ZP_03542784.1| transcriptional regulator, LysR family [Comam... 121 4e-26 ref|YP_001156324.1| LysR family transcriptional regulator [Polyn... 112 3e-23 ref|YP_001757512.1| LysR family transcriptional regulator [Methy... 111 5e-23 >ref|YP_004417111.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC20487.1| LysR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 301 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 89/130 (68%), Gaps = 3/130 (2%) Query: 2 PLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61 P+CSP LL P T ++ +TLI S L+PV W+DWF+ N ++LP G P PS+DRASL Sbjct: 174 PMCSPTLL--NPALPTQYLLSRLTLIDSQLSPVTWADWFSSNALELP-GSPRPSYDRASL 230 Query: 62 ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121 A++AAV+ +G+ LESTRLA +E+ NGELV L E RE HF+SYR E +KI + Sbjct: 231 AISAAVDGLGVILESTRLARRELENGELVELGREEFLPCSREIHFVSYRASEGQVQKIEK 290 Query: 122 FRDWLFLQAG 131 FR+WL +++ Sbjct: 291 FRNWLMVKSA 300 >ref|YP_550874.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45976.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 315 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 5/134 (3%) Query: 1 VPLCSPALLR-DKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRA 59 VPLCSP L+ +P I D+ LI S L+ + W WFA NG+ LP RP PSFDRA Sbjct: 177 VPLCSPQLVDGTRP---IRQQIRDLVLIDSQLSAITWPGWFARNGLTLP-ARPRPSFDRA 232 Query: 60 SLALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKI 119 +L+++AAV+++G+ALES RLAE+EI+ GELV L + ETHF+S R E++++K+ Sbjct: 233 ALSISAAVDAMGVALESVRLAEREISRGELVELGRDVFFPIAEETHFVSCRVNEQHTEKV 292 Query: 120 MRFRDWLFLQAGLN 133 FR+WLF AG++ Sbjct: 293 RLFREWLFKAAGVD 306 >ref|ZP_03542784.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] gb|EED67070.1| transcriptional regulator, LysR family [Comamonas testosteroni KF-1] Length = 315 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 3/131 (2%) Query: 1 VPLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRAS 60 VPLCSP L+ K A L I++ LI S L+ V W DWFA+NG+ P + SFDRA+ Sbjct: 167 VPLCSPTLISRKRTAREL--ISECNLIDSQLSRVTWRDWFAMNGLTTAP-KVNQSFDRAA 223 Query: 61 LALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIM 120 LA++AAV+ +GI LESTR AE+E+A G+LV L E V RETHF S R E+ +KI Sbjct: 224 LAISAAVDGLGITLESTRFAEKELARGDLVELGTKEFPRVSRETHFFSVRTEEQELQKIQ 283 Query: 121 RFRDWLFLQAG 131 FR WL G Sbjct: 284 VFRTWLMKSLG 294 >ref|YP_001156324.1| LysR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34760.1| transcriptional regulator, LysR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 308 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/134 (41%), Positives = 86/134 (64%), Gaps = 3/134 (2%) Query: 2 PLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61 PLCSP ++ P ++ +TLI+S+LN W WF +N +K R + +FDRA+L Sbjct: 178 PLCSPEII--DPSIPVEELMSKLTLIESSLNHHSWEQWFEMNHLKNLSTRKI-AFDRAAL 234 Query: 62 ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121 +++AAV+ +G+ LESTR AE+E++ GELV + G + THFLS+R KN++KI Sbjct: 235 SVSAAVDGIGVVLESTRFAEKEMSRGELVEIGAGVFLPTMDRTHFLSFRSNTKNNQKIKL 294 Query: 122 FRDWLFLQAGLNAE 135 F++W+ +AG+ E Sbjct: 295 FKEWICAKAGVVTE 308 >ref|YP_001757512.1| LysR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB26829.1| transcriptional regulator, LysR family [Methylobacterium radiotolerans JCM 2831] Length = 310 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 3/126 (2%) Query: 3 LCSPALLRD-KPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61 LC+PA+ R +PDA I + S+ +PVRW DWFA NG+ +P G +FDR SL Sbjct: 171 LCTPAVARAAQPDAA--GPIGPFARLDSSFSPVRWPDWFARNGLPMPTGAAGAAFDRGSL 228 Query: 62 ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121 ++AA +G+ALE+ R A E+A G+LVRL G S+ R+ HF+ YRE + +KI Sbjct: 229 VISAAAQGLGVALETLRFARDELAAGQLVRLGGDRAASLTRDLHFICYRERDGALEKIRA 288 Query: 122 FRDWLF 127 FR WL Sbjct: 289 FRRWLL 294