BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0020.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775940.1| transmembrane protein [Herbaspirillum serope...   169   2e-40
ref|YP_004754867.1| hypothetical protein CFU_4223 [Collimonas fu...   155   2e-36
ref|YP_300028.1| DoxX [Ralstonia eutropha JMP134] >gi|72122998|g...   109   2e-22
ref|ZP_07676201.1| SURF4 domain protein [Ralstonia sp. 5_7_47FAA...   104   4e-21
emb|CBJ37085.1| conserved membrane protein of unknown function [...   103   8e-21

>ref|YP_003775940.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64032.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/127 (67%), Positives = 105/127 (82%), Gaps = 1/127 (0%)

Query: 1   MIISKSAFTVGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAG 60
           MI   S + +GRVLLASLFVISGIFKIIGF+GTVGY GSLG+P+PT+AV+ TILVEVG G
Sbjct: 1   MITHYSTYRIGRVLLASLFVISGIFKIIGFAGTVGYFGSLGLPLPTLAVLATILVEVGGG 60

Query: 61  LLLLTGSRFARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIVW 120
           LLL+TG R  RP +L+IA+FTVGATL+AH FW ++ AA QGQ+ HFLKNV+LIG LL+V 
Sbjct: 61  LLLMTG-RGVRPVSLVIALFTVGATLSAHHFWTLEGAAAQGQMIHFLKNVALIGALLLVS 119

Query: 121 SVKPADE 127
           S+ P  +
Sbjct: 120 SIDPEAQ 126


>ref|YP_004754867.1| hypothetical protein CFU_4223 [Collimonas fungivorans Ter331]
 gb|AEK64044.1| putative membrane protein [Collimonas fungivorans Ter331]
          Length = 127

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 98/123 (79%), Gaps = 1/123 (0%)

Query: 1   MIISKSAFTVGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAG 60
           M IS + + +GRVLLASLFVISG+ KI  FSG VGYM SLGIP  T AV++TILVEVG G
Sbjct: 1   MQISPTLYRIGRVLLASLFVISGLLKITAFSGVVGYMSSLGIPFATFAVLITILVEVGGG 60

Query: 61  LLLLTGSRFARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIVW 120
           L ++TG   ARPAAL++A+FTVGATL+AHRFW  D A+MQ QL HFLKN+S+IG LL++ 
Sbjct: 61  LAIMTGWN-ARPAALIVALFTVGATLSAHRFWQADPASMQNQLNHFLKNISIIGALLMLA 119

Query: 121 SVK 123
           +V 
Sbjct: 120 AVD 122


>ref|YP_300028.1| DoxX [Ralstonia eutropha JMP134]
 gb|AAZ65184.1| DoxX [Ralstonia eutropha JMP134]
          Length = 134

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 8   FTVGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGS 67
           +  GR LL  LF+ISG+ KI GF+GT  +M S G+P+ +V +++TI++E+  GL L+TG 
Sbjct: 9   YPAGRALLGVLFLISGVLKIGGFAGTAAWMASAGLPLASVLLVLTIVIEIAGGLTLITGW 68

Query: 68  RFARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIVWSVK 123
             AR  AL +A+F V  +L  H FW+ DAA  Q QL HFLKNVS++GG+L+V++++
Sbjct: 69  N-ARWGALGLAVFLVPVSLVFHGFWSADAATFQNQLNHFLKNVSILGGMLVVYALE 123


>ref|ZP_07676201.1| SURF4 domain protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP65539.1| SURF4 domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 136

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           +GRVL+  LFVISG  K+ GF GTVGYMG++G P+P VA  + +++E G G+ LL G  +
Sbjct: 15  LGRVLMMLLFVISGWGKLTGFQGTVGYMGTVGAPMPMVAAAIAVVMEFGVGIALLIGF-W 73

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP ALL+A+F +G  L AH FW V+ A     +  F KN+S++GGLL++
Sbjct: 74  TRPLALLMALFVLGTALIAHTFWNVEGAMQTANMVQFYKNLSIMGGLLLL 123


>emb|CBJ37085.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 136

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           +GRVL+  LF+ISG  K+ GFS TVGYMG++G P+P +A IV +++E G G+ LL G  +
Sbjct: 15  LGRVLMMLLFLISGWGKLTGFSATVGYMGTVGAPMPMLAAIVAVIMEFGVGIALLIGF-W 73

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP ALL+A+F +G  L AH FW V+ A     +  F KN+S++GGL+++
Sbjct: 74  TRPLALLMALFVLGTALIAHTFWNVEGAMQTANMVQFYKNLSIMGGLILL 123