BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0019.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775941.1| LysR family transcription regulator protein ... 480 e-133 ref|YP_004754866.1| LysR family transcriptional regulator [Colli... 429 e-118 ref|YP_003749530.1| transcriptional regulator, lysr family [Rals... 258 8e-67 gb|EGE58613.1| putative transcriptional regulator protein, LysR ... 258 1e-66 ref|ZP_06639642.1| LysR family transcriptional regulator [Serrat... 257 1e-66 >ref|YP_003775941.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64033.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 244/302 (80%), Positives = 269/302 (89%) Query: 1 MNIERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRP 60 MNIER SLDQLRVFVQVADSGSFLAAAR LARAQSAVSYAI +LE QL + LFDRSGYRP Sbjct: 1 MNIERLSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIASLEEQLGLLLFDRSGYRP 60 Query: 61 QLTDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRD 120 QLT GEALL DARQVLD VDSLQVRAS++++GQELE+ALAVDVFFP DCLVDLL+RFR Sbjct: 61 QLTAPGEALLADARQVLDHVDSLQVRASSYARGQELEMALAVDVFFPLDCLVDLLQRFRA 120 Query: 121 VFPAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHP 180 FPAVTVRLEVEALGAVAERV+DGRAMLGILGTLPTTPPNL+R+TLPSV +V VV+P HP Sbjct: 121 AFPAVTVRLEVEALGAVAERVIDGRAMLGILGTLPTTPPNLMRITLPSVRLVAVVAPHHP 180 Query: 181 LAAVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWG 240 LA VKGRI +K+L QQTQLVLSDRSELTARQDFSVHSRL+WRMSDLGTKHALLRA MGWG Sbjct: 181 LAKVKGRIAEKMLLQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG 240 Query: 241 YMPEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSLAGLKTL 300 MP HVVK+DL +G+LV I T H P+G LPIQCVY+PD+RAGPALSWWLD+LA L +L Sbjct: 241 NMPLHVVKEDLAAGRLVSISTIHHPPQGAELPIQCVYKPDHRAGPALSWWLDALANLGSL 300 Query: 301 DG 302 + Sbjct: 301 EA 302 >ref|YP_004754866.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64043.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 303 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 226/301 (75%), Positives = 251/301 (83%) Query: 1 MNIERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRP 60 MNIER SLDQLRVF QVADSGSFLAAA+ L RAQSAVSYAI TLESQL + LFDRS YRP Sbjct: 1 MNIERLSLDQLRVFAQVADSGSFLAAAKALKRAQSAVSYAISTLESQLGLPLFDRSSYRP 60 Query: 61 QLTDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRD 120 QLT AG LLRDARQVLDQVD+LQ RA+A++ GQELE+ LA+DVFFPT LV LL F+ Sbjct: 61 QLTAAGIELLRDARQVLDQVDALQARAAAYAHGQELEITLALDVFFPTSALVALLADFQL 120 Query: 121 VFPAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHP 180 FP VTVRLE+EALG+VAERVLDG AMLG+LGTLP PPNLLR++LP+V++VGVVSP H Sbjct: 121 AFPGVTVRLEIEALGSVAERVLDGVAMLGVLGTLPIVPPNLLRISLPTVLLVGVVSPAHA 180 Query: 181 LAAVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWG 240 LA + GRIP +L QQ QLVLSDRS LTA QDFSVHS LSWRMSDLGTKHALLRA MGWG Sbjct: 181 LAQISGRIPGHVLEQQVQLVLSDRSALTANQDFSVHSSLSWRMSDLGTKHALLRAGMGWG 240 Query: 241 YMPEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSLAGLKTL 300 YMP HVV DDL SG+LVRI T+ H PEG ALP+QCVYRPD GPAL+WWLD+LA L + Sbjct: 241 YMPRHVVADDLASGRLVRILTAGHPPEGAALPMQCVYRPDREVGPALAWWLDALAQLTSF 300 Query: 301 D 301 D Sbjct: 301 D 301 >ref|YP_003749530.1| transcriptional regulator, lysr family [Ralstonia solanacearum PSI07] emb|CBJ34887.1| Transcriptional regulator, LysR family [Ralstonia solanacearum PSI07] Length = 299 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 137/292 (46%), Positives = 188/292 (64%) Query: 3 IERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQL 62 ++ SLDQLR F+ D+GSF AAAR L RAQS VS + LE QL VALFDRS PQL Sbjct: 2 LDGVSLDQLRAFIATVDAGSFSAAARKLRRAQSMVSGLVANLEDQLGVALFDRSRRYPQL 61 Query: 63 TDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVF 122 T G LL DAR V+ +D ++ RA ++G E E+ + VDVFFP + ++ + FR+ F Sbjct: 62 TTEGTVLLADARSVVGGIDGMKSRAKGMTKGLEPELCVVVDVFFPIQMISEVAKAFRERF 121 Query: 123 PAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHPLA 182 P V +RL VEALG + VLDGRA +GI+G+LPT P +L L +V V V + HPLA Sbjct: 122 PMVPLRLYVEALGGAYQPVLDGRASVGIVGSLPTVPASLTAEKLTTVGFVMVAAQDHPLA 181 Query: 183 AVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWGYM 242 A++G I + LA+ TQLVL+DRS+L+A ++F V S L+W ++DL KHA L + +GWG M Sbjct: 182 ALRGPIAKEQLARHTQLVLTDRSDLSAGREFGVFSGLTWHLADLFAKHAFLLSGLGWGGM 241 Query: 243 PEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSL 294 P H V+ DL +G+LV +Q + P G+++ + Y GPA W ++ L Sbjct: 242 PLHAVQADLDAGRLVELQIDEVPPGGLSMQMSAAYPTASPPGPAGRWLIERL 293 >gb|EGE58613.1| putative transcriptional regulator protein, LysR family [Rhizobium etli CNPAF512] Length = 301 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 136/292 (46%), Positives = 182/292 (62%) Query: 3 IERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQL 62 ++ SLDQLR F+ AD GSF AAAR L RAQSAVS + LE QL V LFDRSG P+L Sbjct: 1 MDGLSLDQLRTFISAADEGSFSAAARRLGRAQSAVSELVRGLEIQLGVTLFDRSGRYPRL 60 Query: 63 TDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVF 122 T AGE LL AR+V+ +VDS + +A + G E E+++A+DVFFP + + + FR F Sbjct: 61 TQAGERLLATAREVVAKVDSFKSQAKGMAAGLEPELSVAIDVFFPIHIIAEAAKDFRQQF 120 Query: 123 PAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHPLA 182 P V +RL VEALG + +LD RA GI+G+LP P +L L V + V + HPLA Sbjct: 121 PEVPLRLFVEALGGTVQPILDQRAGFGIVGSLPAMPAGILTEPLAGVTFLVVAAADHPLA 180 Query: 183 AVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWGYM 242 A+ G I LA+ QLVL+DR+EL+ ++F V S +WR++DL KH L +GWG M Sbjct: 181 AIGGTISRAELAKHVQLVLTDRTELSRGREFGVMSPQTWRLADLFAKHTFLLNGLGWGGM 240 Query: 243 PEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSL 294 PEH V+ D+ +G+LV + S G+ LP+ YR D GPA W ++ L Sbjct: 241 PEHAVRADIAAGRLVELAVEDISASGLRLPMSAAYRSDGPPGPAGRWLIERL 292 >ref|ZP_06639642.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE95287.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 294 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/290 (48%), Positives = 178/290 (61%), Gaps = 2/290 (0%) Query: 3 IERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQL 62 + SLD LR FV AD GSF AA RV+ RAQS VS I +LE QL V LF+R G P+L Sbjct: 2 LNGISLDYLRTFVAAADHGSFSAAGRVIGRAQSVVSQTIASLEGQLGVTLFERVGRYPKL 61 Query: 63 TDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVF 122 T G LL DAR+V+ D+L +A +FS G E E+++ VDV FP CL D L F+ F Sbjct: 62 TVQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHRCLTDALGSFKAHF 121 Query: 123 PAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHPLA 182 P+ +RL VEALG VAE V+ G+ LGI GTLP PP L L + ++ V +P PLA Sbjct: 122 PSTPLRLHVEALGRVAELVIKGQCSLGITGTLPFLPPGLAAERLFNEEMITVAAPGSPLA 181 Query: 183 AVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWGYM 242 G I + L +TQLVL+DRS LT D+ V WR++DLG+KHA LRA +GWG+M Sbjct: 182 GRNGPIAFRELLDETQLVLTDRSSLTNGVDYGVQGENIWRLADLGSKHAFLRAGLGWGHM 241 Query: 243 PEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLD 292 P ++ +DLK G+LVRI+ P LP Q +Y D GPA W L+ Sbjct: 242 PRWLIGEDLKEGRLVRIEL--EGPSAGLLPFQAIYPSDRLPGPAGRWLLE 289