BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0018.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775942.1| AraC family transcription regulator protein ...   308   2e-82
ref|XP_002540005.1| HTH-type transcriptional regulator glxA, put...   282   2e-74
ref|ZP_08182390.1| transcriptional regulator, AraC family with a...   243   1e-62
ref|YP_001857028.1| AraC family transcriptional regulator [Burkh...   239   1e-61
ref|YP_001896567.1| AraC family transcriptional regulator [Burkh...   231   6e-59

>ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64034.1| AraC family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 343

 Score =  308 bits (790), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 166/194 (85%)

Query: 1   VTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIA 60
           VTTHWDWA  LQ+++PA++VD +PI+IRQG IWTSAGVTAGIDLALALVEQD GH  AIA
Sbjct: 135 VTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALALVEQDLGHASAIA 194

Query: 61  TARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSP 120
           TARQLVMFIKRPGGQSQFS PL +QS+   RFAELHAWIA++L  DL VENLA R  MSP
Sbjct: 195 TARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIAAHLADDLHVENLAHRAGMSP 254

Query: 121 RTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQ 180
           RTFAR YVAE GRTPA+TVE MRLEAA RALEET LPLK IA++ G+GEEQNLRRVF RQ
Sbjct: 255 RTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEEQNLRRVFLRQ 314

Query: 181 LGVSPAQYRSRFSA 194
           LGVSP QYR RF+A
Sbjct: 315 LGVSPGQYRERFAA 328


>ref|XP_002540005.1| HTH-type transcriptional regulator glxA, putative [Ricinus
           communis]
 gb|EEF22378.1| HTH-type transcriptional regulator glxA, putative [Ricinus
           communis]
          Length = 244

 Score =  282 bits (721), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 158/193 (81%)

Query: 3   THWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIATA 62
           THW+W  RL++  P ++VD + IFI  G IWTSAGV+AGIDL LAL+E+DYGH VAI TA
Sbjct: 47  THWEWVDRLRELHPQVDVDADKIFINDGAIWTSAGVSAGIDLTLALIEEDYGHHVAIETA 106

Query: 63  RQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSPRT 122
           RQ+VMFIKR GGQSQFSVPL +Q+ E+ RF  LH W+A+NL  +L V+ LA +  M+PRT
Sbjct: 107 RQMVMFIKRSGGQSQFSVPLAAQARESGRFDALHTWVAANLHENLTVDRLAEQAGMTPRT 166

Query: 123 FARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQLG 182
           FAR+YV++ GRTPAK VEAMRLEAACRALE+T LPL++IA  TG+ EEQNLRRVFQRQLG
Sbjct: 167 FARSYVSQLGRTPAKMVEAMRLEAACRALEKTTLPLETIAATTGYVEEQNLRRVFQRQLG 226

Query: 183 VSPAQYRSRFSAH 195
           VSP QYRSRFS H
Sbjct: 227 VSPGQYRSRFSGH 239


>ref|ZP_08182390.1| transcriptional regulator, AraC family with amidase-like domain
           [Xanthomonas gardneri ATCC 19865]
 gb|EGD19970.1| transcriptional regulator, AraC family with amidase-like domain
           [Xanthomonas gardneri ATCC 19865]
          Length = 327

 Score =  243 bits (619), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 137/190 (72%)

Query: 3   THWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIATA 62
           THW WA RL    P I VD + IF+R G +W+SAGVTAGIDL LAL+E D+GH++AI  A
Sbjct: 126 THWGWADRLSNLHPGIRVDADKIFVRDGYVWSSAGVTAGIDLTLALIEDDHGHRLAIDVA 185

Query: 63  RQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSPRT 122
           RQLV+F+KR GGQSQFS PL +Q+S    FAELH W+A+NL  DLRVE LA R+ MSPRT
Sbjct: 186 RQLVVFVKRSGGQSQFSAPLSAQTSAGGDFAELHGWMAANLHEDLRVETLAGRMKMSPRT 245

Query: 123 FARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQLG 182
           FAR Y +  G TPAK VE +R+EAA R LE  + P+K IA  TG  +EQ LRR F R LG
Sbjct: 246 FARVYRSTCGVTPAKAVETLRVEAARRLLESGNAPIKRIAALTGLSDEQTLRRTFLRVLG 305

Query: 183 VSPAQYRSRF 192
           V+P  YR RF
Sbjct: 306 VAPGDYRDRF 315


>ref|YP_001857028.1| AraC family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC69982.1| transcriptional regulator, AraC family [Burkholderia phymatum
           STM815]
          Length = 363

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 143/203 (70%), Gaps = 10/203 (4%)

Query: 2   TTHWDWALRLQQQFPAIEVDPEPIFIRQ------GD----IWTSAGVTAGIDLALALVEQ 51
           TTHW  A RL ++F  ++VD EPIFIR+      GD    IWTSAGVTAGIDLALAL+++
Sbjct: 158 TTHWRDAGRLAERFARVQVDAEPIFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQE 217

Query: 52  DYGHKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVEN 111
           DYGH VA+  AR+LV+F+KRPGGQSQFS  L +Q+S    F  LH W+ASNL  DL VE 
Sbjct: 218 DYGHAVAMQVARRLVVFVKRPGGQSQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVER 277

Query: 112 LASRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQ 171
           LA    MSPR FAR YV E GRTPAKTV AMRLEAA RAL E+  PLK IA + G G EQ
Sbjct: 278 LAEEARMSPRNFARRYVDEVGRTPAKTVSAMRLEAASRALAESRRPLKRIALDCGFGSEQ 337

Query: 172 NLRRVFQRQLGVSPAQYRSRFSA 194
           NLRR F R  GV P  YR RF++
Sbjct: 338 NLRRAFVRSFGVLPLDYRERFAS 360


>ref|YP_001896567.1| AraC family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD17343.1| transcriptional regulator, AraC family [Burkholderia phytofirmans
           PsJN]
          Length = 437

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 145/198 (73%), Gaps = 7/198 (3%)

Query: 2   TTHWDWALRLQQQFPAIEVDPEPIFIR-----QGD--IWTSAGVTAGIDLALALVEQDYG 54
           TTHW  A RL Q+FP + VD +PIFIR     +GD  +WTSAGVTAGIDLALAL+E+D G
Sbjct: 218 TTHWRDAPRLAQRFPNVHVDADPIFIRDAGRHEGDGVVWTSAGVTAGIDLALALIEEDVG 277

Query: 55  HKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLAS 114
           H VA+  AR+LV+F+KRPGGQSQ+S  L +Q+S N  F  LH+W+ ++L+ DL VE LA 
Sbjct: 278 HAVAMQAARRLVVFMKRPGGQSQYSAALAAQASANGPFEALHSWMTAHLRDDLSVERLAE 337

Query: 115 RVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLR 174
           R  MSPRTFAR YV E GRTPAKTV A+RLEAA RAL E+  PLK IA + G G EQNLR
Sbjct: 338 RTRMSPRTFARRYVDEVGRTPAKTVSALRLEAASRALAESRRPLKRIALDCGFGSEQNLR 397

Query: 175 RVFQRQLGVSPAQYRSRF 192
           R F R+ GV P  YR RF
Sbjct: 398 RAFLRRFGVLPLDYRERF 415