BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0007.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspiril...    91   7e-17

>ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62228.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 5/88 (5%)

Query: 1  MISKKIIPALLVTAVLAAS--VSTSASAHDRGGNGLAIAAGIIGAVAVGSMIANANAGPS 58
          M SKKI   L+ T +LA++  VST A AHDRGGNG+AIAAGIIGAVA+GS+IANAN+ P 
Sbjct: 1  MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV 60

Query: 59 YA--PQPVYQQAPQPVYYQEAPQQVYYQ 84
          Y   PQ VY +APQPVYYQ  PQQV Y+
Sbjct: 61 YQAPPQQVYYEAPQPVYYQ-PPQQVVYE 87