BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0006.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778121.1| permease [Herbaspirillum seropedicae SmR1] >...   205   2e-51
ref|YP_001565632.1| hypothetical protein Daci_4618 [Delftia acid...   186   1e-45
ref|YP_004487566.1| hypothetical protein DelCs14_2192 [Delftia s...   185   2e-45
ref|ZP_03542297.1| protein of unknown function DUF6 transmembran...   185   2e-45
ref|YP_983089.1| hypothetical protein Pnap_2869 [Polaromonas nap...   185   2e-45

>ref|YP_003778121.1| permease [Herbaspirillum seropedicae SmR1]
 gb|ADJ66213.1| permease protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/126 (80%), Positives = 113/126 (89%)

Query: 1   MNYTPGRLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPA 60
           M+YTP R M Y CL LSMS+VGAYVALTKPLAA LPVFLLAWLRFGIGA AMLRWLKKPA
Sbjct: 1   MSYTPSRPMGYGCLILSMSLVGAYVALTKPLAAMLPVFLLAWLRFGIGAVAMLRWLKKPA 60

Query: 61  NEAPLTPRTRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLR 120
           +E PL+ ++R LVFLESFLGNFLFT+CMI+GVSMT+AVSAGVIMS IPAVVA+MSWIFL+
Sbjct: 61  SEQPLSTQSRWLVFLESFLGNFLFTLCMITGVSMTNAVSAGVIMSAIPAVVAVMSWIFLK 120

Query: 121 ERIGAR 126
           E+I  R
Sbjct: 121 EKISLR 126


>ref|YP_001565632.1| hypothetical protein Daci_4618 [Delftia acidovorans SPH-1]
 gb|ABX37247.1| protein of unknown function DUF6 transmembrane [Delftia acidovorans
           SPH-1]
          Length = 316

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MNYTPGRLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPA 60
           MN T  R  AY CLALSMS+VG+YVAL+KPLAA  PV LLAWLRFGIGA AMLRWL+KPA
Sbjct: 1   MN-TSHRRSAYACLALSMSLVGSYVALSKPLAAIFPVLLLAWLRFGIGAIAMLRWLRKPA 59

Query: 61  NEAPLTPRTRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLR 120
           +EAPL+ RT+ L+FLES  GNFLFTICM++GVS+TSAV+AGV M+ IPA VALMSW+FLR
Sbjct: 60  DEAPLSRRTQGLLFLESLFGNFLFTICMVTGVSLTSAVTAGVTMAAIPAAVALMSWLFLR 119

Query: 121 ERIGARXALVGVLAL 135
           ER+ AR  L   LA+
Sbjct: 120 ERVAARTWLAIALAV 134


>ref|YP_004487566.1| hypothetical protein DelCs14_2192 [Delftia sp. Cs1-4]
 gb|AEF89211.1| protein of unknown function DUF6 transmembrane [Delftia sp. Cs1-4]
          Length = 316

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 111/135 (82%), Gaps = 1/135 (0%)

Query: 1   MNYTPGRLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPA 60
           MN T  R  AY CLALSMS+VG+YVAL+KPLAA  PV LLAWLRFGIGA AMLRWL+KPA
Sbjct: 1   MN-TSHRRSAYACLALSMSLVGSYVALSKPLAAIFPVLLLAWLRFGIGAIAMLRWLRKPA 59

Query: 61  NEAPLTPRTRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLR 120
            EAPL+ RT+ L+FLES  GNFLFTICM++GVS+TSAV+AGV M+ IPA VALMSW+FLR
Sbjct: 60  EEAPLSRRTQGLLFLESLFGNFLFTICMVTGVSLTSAVTAGVTMAAIPAAVALMSWLFLR 119

Query: 121 ERIGARXALVGVLAL 135
           ER+ AR  L   LA+
Sbjct: 120 ERVAARTWLAIALAV 134


>ref|ZP_03542297.1| protein of unknown function DUF6 transmembrane [Comamonas
           testosteroni KF-1]
 gb|EED66583.1| protein of unknown function DUF6 transmembrane [Comamonas
           testosteroni KF-1]
          Length = 303

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 107/124 (86%)

Query: 3   YTPGRLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPANE 62
           +TP R +AY+CLALSMS+VG+YVAL+KPLAA  PV LLAWLRFGIGA AML WLK PA+E
Sbjct: 2   HTPSRPLAYLCLALSMSLVGSYVALSKPLAAIFPVMLLAWLRFGIGAVAMLGWLKAPAHE 61

Query: 63  APLTPRTRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLRER 122
           A LT +T+ L+F ESF GNFLFT+CMISGV+MTSAV+AGV M+ IPA VA+MSW+FLRE 
Sbjct: 62  AALTRQTKWLLFFESFFGNFLFTLCMISGVAMTSAVTAGVTMAAIPAAVAIMSWLFLREA 121

Query: 123 IGAR 126
           +GAR
Sbjct: 122 VGAR 125


>ref|YP_983089.1| hypothetical protein Pnap_2869 [Polaromonas naphthalenivorans CJ2]
 gb|ABM38168.1| protein of unknown function DUF6, transmembrane [Polaromonas
           naphthalenivorans CJ2]
          Length = 320

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 106/118 (89%)

Query: 9   MAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPANEAPLTPR 68
           +AY CLALSMS+VG+YVAL+KPL AALPVFLLAWLRFGIG  AM  WLKKPA+EAP++ +
Sbjct: 10  IAYACLALSMSLVGSYVALSKPLVAALPVFLLAWLRFGIGGLAMAHWLKKPAHEAPMSSQ 69

Query: 69  TRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLRERIGAR 126
           TR L+FLESFLGNFLF+ICM+ GVS+TSAV+AGVIM+ IPA VAL+SW+FLRERI AR
Sbjct: 70  TRRLLFLESFLGNFLFSICMLFGVSLTSAVAAGVIMAAIPATVALLSWLFLRERISAR 127