BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0004.p (389 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_775394.1| extracellular ligand-binding receptor [Burkhold... 236 7e-60 ref|ZP_02365527.1| amino acid ABC transporter, periplasmic amino... 235 8e-60 ref|YP_001810670.1| extracellular ligand-binding receptor [Burkh... 235 1e-59 ref|ZP_02910238.1| Extracellular ligand-binding receptor [Burkho... 234 2e-59 ref|ZP_02893846.1| Extracellular ligand-binding receptor [Burkho... 232 7e-59 >ref|YP_775394.1| extracellular ligand-binding receptor [Burkholderia ambifaria AMMD] gb|ABI89060.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia ambifaria AMMD] Length = 388 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 197/352 (55%), Gaps = 1/352 (0%) Query: 29 ATAADKNVSIGFAGPLTGLSSASGTSMLNAVKMAVDEINGAEMRLGSDRLVLKLQVQDDK 88 A +A + + IG A PLTG S+ G + N ++A+D+ N +G +V KL DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAEHPSIGGKPVVYKLVAADDQ 84 Query: 89 SNPRIAEIAARYFVRNDTAGVVGIFNSAVAVSSSAIYQKAGIPHFAISGT-RRFTQQGHD 147 S+PR A A+ V GVVG +N+ +V +S +Y+ AGI A + T ++TQQG+ Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 148 SAFRIAAYDEQRAAVLASYVAQELHKSRVAIVHDDSVFGRDYKEKFESAFTKLGGKIVSV 207 +AFRI +D+ +Y + L R+A++ D + FG ++F GG IV Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGTIVDR 204 Query: 208 NSVNATTYDFNDILKAIRVGKADAVFFGGLASQSAMLAQNMYRLGIEAQLVTAASLVGPI 267 VN T DF+ +L AI+ +AD VFFGGL +Q+A +A+ M +LG+ A L+ A V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 268 FLQTAGPGAEGTVSIMPGAHQRKSKQLDAFEKNYLQRYNAAPGAYSAVAYDQVQVLAAAI 327 FL AG EG ++ PG + +AF+ Y R++A ++ AYD L AA+ Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAV 324 Query: 328 VRAGSANPRKVTAALHAIKYNGLTGTISFDAHGDLRDVSFSTYQVRNSVWTM 379 +AGS P KV AA+ AI G+TG ++FD G+L+D +F+ YQVR WT+ Sbjct: 325 QKAGSTQPAKVVAAVRAIDRPGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTV 376 >ref|ZP_02365527.1| amino acid ABC transporter, periplasmic amino acid-binding protein, putative [Burkholderia oklahomensis C6786] Length = 431 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 134/351 (38%), Positives = 194/351 (55%), Gaps = 1/351 (0%) Query: 29 ATAADKNVSIGFAGPLTGLSSASGTSMLNAVKMAVDEINGAEMRLGSDRLVLKLQVQDDK 88 A +A + V IG A PLTG S+ G + N ++A+D+ N LG +V KL DD+ Sbjct: 45 AQSAPRTVLIGLAAPLTGPSARIGKDLQNGAQLALDDANSRHPALGGKPVVYKLVAVDDQ 104 Query: 89 SNPRIAEIAARYFVRNDTAGVVGIFNSAVAVSSSAIYQKAGIPHFAISGT-RRFTQQGHD 147 S+PR A A+ V GVVG +N+ +V +S IY+ AGI A + T R++T+QG+ Sbjct: 105 SDPRTAVTVAQQLVERRVIGVVGHWNTGCSVPASRIYRDAGIAQIAPASTGRQYTRQGYA 164 Query: 148 SAFRIAAYDEQRAAVLASYVAQELHKSRVAIVHDDSVFGRDYKEKFESAFTKLGGKIVSV 207 +AFRI +D+ A +YV + LH R+A++ D + FG ++F GG IV Sbjct: 165 TAFRIVGHDDAGGAYAGAYVVKTLHAKRIAVIDDRTAFGAGLADQFVKGVEANGGAIVDR 224 Query: 208 NSVNATTYDFNDILKAIRVGKADAVFFGGLASQSAMLAQNMYRLGIEAQLVTAASLVGPI 267 VN DF+ +L A++ +AD VFFGGL +Q+A LA+ M +L + A LV A V Sbjct: 225 QYVNDKATDFSAVLTAVKARRADVVFFGGLDAQAAPLARRMRQLKLSATLVGAGGFVTQT 284 Query: 268 FLQTAGPGAEGTVSIMPGAHQRKSKQLDAFEKNYLQRYNAAPGAYSAVAYDQVQVLAAAI 327 FL AGP +G ++ PG AF+ Y RY A ++ AYD L AA Sbjct: 285 FLSLAGPDGDGVTALEPGLPLAGMPGGAAFDARYRARYRAPIELHAPFAYDATATLIAAA 344 Query: 328 VRAGSANPRKVTAALHAIKYNGLTGTISFDAHGDLRDVSFSTYQVRNSVWT 378 RA S +P ++ A LH +K G+TG I+FDA G+L+D +F+ Y+ WT Sbjct: 345 ERANSTDPARLPAVLHTLKRQGVTGAIAFDAEGNLQDPAFTIYRAGGGKWT 395 >ref|YP_001810670.1| extracellular ligand-binding receptor [Burkholderia ambifaria MC40-6] gb|ACB66454.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MC40-6] Length = 388 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 197/352 (55%), Gaps = 1/352 (0%) Query: 29 ATAADKNVSIGFAGPLTGLSSASGTSMLNAVKMAVDEINGAEMRLGSDRLVLKLQVQDDK 88 A +A + + IG A PLTG S+ G + N ++A+D+ N +G +V KL DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQ 84 Query: 89 SNPRIAEIAARYFVRNDTAGVVGIFNSAVAVSSSAIYQKAGIPHFAISGT-RRFTQQGHD 147 S+PR A A+ V GVVG +N+ +V +S +Y+ AGI A + T ++TQQG+ Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 148 SAFRIAAYDEQRAAVLASYVAQELHKSRVAIVHDDSVFGRDYKEKFESAFTKLGGKIVSV 207 +AFRI +D+ +Y + L R+A++ D + FG ++F GG IV Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGTIVDR 204 Query: 208 NSVNATTYDFNDILKAIRVGKADAVFFGGLASQSAMLAQNMYRLGIEAQLVTAASLVGPI 267 VN T DF+ +L AI+ +AD VFFGGL +Q+A +A+ M +LG+ A L+ A V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVSAPLLGAGGFVSQT 264 Query: 268 FLQTAGPGAEGTVSIMPGAHQRKSKQLDAFEKNYLQRYNAAPGAYSAVAYDQVQVLAAAI 327 FL AG EG ++ PG + +AF+ Y R++A ++ AYD L AA+ Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAV 324 Query: 328 VRAGSANPRKVTAALHAIKYNGLTGTISFDAHGDLRDVSFSTYQVRNSVWTM 379 +AG+ P KV AA+ AI G+TG ++FD G+L+D +F+ YQVR WT+ Sbjct: 325 QKAGTTQPAKVVAAVRAIDRPGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTV 376 >ref|ZP_02910238.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MEX-5] gb|EDT38625.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MEX-5] Length = 388 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 197/352 (55%), Gaps = 1/352 (0%) Query: 29 ATAADKNVSIGFAGPLTGLSSASGTSMLNAVKMAVDEINGAEMRLGSDRLVLKLQVQDDK 88 A +A + + IG A PLTG S+ G + N ++A+D+ N +G +V KL DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQ 84 Query: 89 SNPRIAEIAARYFVRNDTAGVVGIFNSAVAVSSSAIYQKAGIPHFAISGT-RRFTQQGHD 147 S+PR A A+ V GVVG +N+ +V +S +Y+ AGI A + T ++TQQG+ Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 148 SAFRIAAYDEQRAAVLASYVAQELHKSRVAIVHDDSVFGRDYKEKFESAFTKLGGKIVSV 207 +AFRI +D+ +Y + L R+A++ D + FG ++F GG IV Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGMQANGGTIVDR 204 Query: 208 NSVNATTYDFNDILKAIRVGKADAVFFGGLASQSAMLAQNMYRLGIEAQLVTAASLVGPI 267 VN T DF+ +L AI+ +AD VFFGGL +Q+A +A+ M +LG+ A L+ A V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 268 FLQTAGPGAEGTVSIMPGAHQRKSKQLDAFEKNYLQRYNAAPGAYSAVAYDQVQVLAAAI 327 FL AG EG ++ PG + +AF+ Y R++A ++ AYD L AA Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAT 324 Query: 328 VRAGSANPRKVTAALHAIKYNGLTGTISFDAHGDLRDVSFSTYQVRNSVWTM 379 +AG+ P KV AA+ AI G+TG ++FD+ G+L+D +F+ YQVR WT+ Sbjct: 325 QKAGTTQPAKVVAAVRAIDRPGVTGRVAFDSEGNLKDPAFTIYQVRGGKWTV 376 >ref|ZP_02893846.1| Extracellular ligand-binding receptor [Burkholderia ambifaria IOP40-10] gb|EDT00572.1| Extracellular ligand-binding receptor [Burkholderia ambifaria IOP40-10] Length = 388 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 195/352 (55%), Gaps = 1/352 (0%) Query: 29 ATAADKNVSIGFAGPLTGLSSASGTSMLNAVKMAVDEINGAEMRLGSDRLVLKLQVQDDK 88 A +A + + IG A PLTG S+ G + N ++A+D+ N +G +V KL DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQ 84 Query: 89 SNPRIAEIAARYFVRNDTAGVVGIFNSAVAVSSSAIYQKAGIPHFAISGT-RRFTQQGHD 147 S+PR A A+ V GVVG +N+ +V +S +Y+ AGI A + T ++TQQG+ Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 148 SAFRIAAYDEQRAAVLASYVAQELHKSRVAIVHDDSVFGRDYKEKFESAFTKLGGKIVSV 207 +AFRI +D+ +Y + L R+A++ D + FG ++F GG IV Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGAIVDR 204 Query: 208 NSVNATTYDFNDILKAIRVGKADAVFFGGLASQSAMLAQNMYRLGIEAQLVTAASLVGPI 267 VN T DF+ +L AI+ +AD VFFGGL +Q+A +A+ M +LG+ A L+ A V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 268 FLQTAGPGAEGTVSIMPGAHQRKSKQLDAFEKNYLQRYNAAPGAYSAVAYDQVQVLAAAI 327 FL AG EG ++ PG + AF+ Y R++A ++ AYD L AA Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGKAFDAQYRARWHAPIELHAPFAYDAAATLIAAT 324 Query: 328 VRAGSANPRKVTAALHAIKYNGLTGTISFDAHGDLRDVSFSTYQVRNSVWTM 379 +AG+ P KV AA+ AI G+TG ++FD G+L+D +F+ YQVR WT+ Sbjct: 325 QKAGTTQPAKVVAAVRAIDRAGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTV 376