BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0044.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_551355.1| TRAP dicarboxylate transporter subunit DctM [Po... 469 e-130 ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, put... 444 e-122 ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit... 442 e-122 ref|YP_439181.1| TRAP transporter DctM family protein [Burkholde... 442 e-122 ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, put... 441 e-122 >ref|YP_551355.1| TRAP dicarboxylate transporter subunit DctM [Polaromonas sp. JS666] gb|ABE46457.1| TRAP C4-dicarboxylate transport system permease DctM subunit [Polaromonas sp. JS666] Length = 395 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/353 (65%), Positives = 295/353 (83%) Query: 1 MSSRLIELLLRMFGRLRGGLNLIMVTAMAFFSGVSGSKLADVAAVGGILMPAVRQTRQNP 60 MSSRLIELLLRMFGR+RGGL LI +TA AFFSGVSGSKLAD+AAVGGI+MPAVR+TRQ+P Sbjct: 42 MSSRLIELLLRMFGRVRGGLGLITITATAFFSGVSGSKLADIAAVGGIIMPAVRKTRQDP 101 Query: 61 NEAAGLLAASAIMAETIPPCINMIILGFVANLSIGGLFLAGILPALAMAIALCIMAYYTG 120 NE AGLLA +A+MAETIPPCINMII+GFVAN+SI GLF+AG++PA +A++L + Y G Sbjct: 102 NETAGLLACTAVMAETIPPCINMIIMGFVANISIAGLFMAGLVPAAVLALSLAAVTVYVG 161 Query: 121 RKVDVSVVFIKPRPMGKLIGGALVGLIMIVMIGKGVASGVATSTEISSFAVVYAIVVGWL 180 +++ F +PM +L+GGALV L+M+ MIGKGV SGVATSTE+S+FAV+YA+VVG L Sbjct: 162 TRINPDEAFDVKKPMLRLLGGALVALVMVAMIGKGVTSGVATSTEVSAFAVMYALVVGAL 221 Query: 181 AFRELNRKVLVKLFVDAASMSGMVLFIVAAASSVAYALTVEQIPHALAELMVSLAHDYGS 240 AFREL + + +LFV +ASM+G +LFIVAAASSV++ALT++QIP L++ M++ AH YGS Sbjct: 222 AFRELTMRSVAQLFVRSASMAGGILFIVAAASSVSFALTIQQIPQYLSDFMITFAHHYGS 281 Query: 241 WMFILISVLALILFGAVLEGAPALIIFGPLLTPIAVQLGYNPLHFAIILVISMGIGLFSP 300 MF+L+SVL +I+FGAVLEGAPALIIFGPLLTPIA QLG +PLHF ++VI+MG GLF+P Sbjct: 282 TMFVLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGVHPLHFGTVMVIAMGFGLFAP 341 Query: 301 PFGLGMYATCAIAQVRLQDVVKPYLKYLAILLVTLVVIIVWPDLSLWLPRRFG 353 P GLG++ATCAI +++V +P +KYL +L VTL+V+++ P SLWLP R G Sbjct: 342 PIGLGLFATCAITGTEVKNVARPMMKYLVVLFVTLMVLVLVPAFSLWLPTRMG 394 >ref|ZP_02384402.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis Bt4] Length = 631 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/353 (64%), Positives = 286/353 (81%) Query: 1 MSSRLIELLLRMFGRLRGGLNLIMVTAMAFFSGVSGSKLADVAAVGGILMPAVRQTRQNP 60 MSSRLIELLLR+FGR+RGGL LI + A AFFSGVSGSKLAD+AAVGG++MPAVR +R++P Sbjct: 278 MSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSREDP 337 Query: 61 NEAAGLLAASAIMAETIPPCINMIILGFVANLSIGGLFLAGILPALAMAIALCIMAYYTG 120 NEAA LLA SA+MAETIPPC+NMII+GFVAN+SI GLFLAG++PA +A L +A G Sbjct: 338 NEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVICG 397 Query: 121 RKVDVSVVFIKPRPMGKLIGGALVGLIMIVMIGKGVASGVATSTEISSFAVVYAIVVGWL 180 R+++++ PR L+GGALV L+MI MIGKGV SG+ATSTE+S+FAVVYA++VG L Sbjct: 398 RRINLADALPHPRAWMPLLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVGGL 457 Query: 181 AFRELNRKVLVKLFVDAASMSGMVLFIVAAASSVAYALTVEQIPHALAELMVSLAHDYGS 240 AFREL K +V++FV +ASM+ +LFIVAAASSV++ALT+EQIP +++ M+ AH YG Sbjct: 458 AFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQYGP 517 Query: 241 WMFILISVLALILFGAVLEGAPALIIFGPLLTPIAVQLGYNPLHFAIILVISMGIGLFSP 300 F+L+SVL +I+FGAVLEGAPALIIFGPLLTPIA QLG NPLHF ++V++MG+GLF+P Sbjct: 518 TTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLFAP 577 Query: 301 PFGLGMYATCAIAQVRLQDVVKPYLKYLAILLVTLVVIIVWPDLSLWLPRRFG 353 P GLG++ATCAI ++ VV+P LKYL +L LV +I+ P SLWLP R G Sbjct: 578 PIGLGLFATCAITGTEMKAVVRPMLKYLLVLCTALVALILVPSFSLWLPTRLG 630 >ref|YP_001863045.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] gb|ACC75999.1| TRAP dicarboxylate transporter, DctM subunit [Burkholderia phymatum STM815] Length = 631 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 229/353 (64%), Positives = 292/353 (82%) Query: 1 MSSRLIELLLRMFGRLRGGLNLIMVTAMAFFSGVSGSKLADVAAVGGILMPAVRQTRQNP 60 MSSRLIELLLR+FGR+RGGL LI + A AFFSGVSGSKLAD+AAVGG++MPAVRQ++++P Sbjct: 278 MSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRQSKEDP 337 Query: 61 NEAAGLLAASAIMAETIPPCINMIILGFVANLSIGGLFLAGILPALAMAIALCIMAYYTG 120 NEAA LLA SA+MAETIPPC+NMII+GFVAN+SI GLFLAG++PA +A AL I+A G Sbjct: 338 NEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAAALAIVAVIFG 397 Query: 121 RKVDVSVVFIKPRPMGKLIGGALVGLIMIVMIGKGVASGVATSTEISSFAVVYAIVVGWL 180 R+++++ PR L+GGALV L+MI MIGKGV SG+ATSTE+S+FAVVYA++VGWL Sbjct: 398 RRINLADALTNPRAWMPLLGGALVALVMISMIGKGVTSGIATSTEVSAFAVVYALIVGWL 457 Query: 181 AFRELNRKVLVKLFVDAASMSGMVLFIVAAASSVAYALTVEQIPHALAELMVSLAHDYGS 240 AFREL + + ++FV +ASM+ +LFIVAAASSV++ALTVEQIP +++ M++ AH YG Sbjct: 458 AFRELTPQSVTRVFVRSASMASSILFIVAAASSVSFALTVEQIPALVSDSMIAFAHQYGP 517 Query: 241 WMFILISVLALILFGAVLEGAPALIIFGPLLTPIAVQLGYNPLHFAIILVISMGIGLFSP 300 MF+L+SVL +I+FGAVLEGAPALIIFGPLLTPIA QLG NPLHF ++V++MG+GLF+P Sbjct: 518 TMFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIATQLGINPLHFGTVIVVAMGMGLFAP 577 Query: 301 PFGLGMYATCAIAQVRLQDVVKPYLKYLAILLVTLVVIIVWPDLSLWLPRRFG 353 P GLG++ATCAI ++ V +P LKYL +L + LVV+I+ P SLWLP R G Sbjct: 578 PVGLGLFATCAITGTEMKAVARPMLKYLLVLCIALVVLILVPSFSLWLPTRLG 630 >ref|YP_439181.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] ref|ZP_05590564.1| TRAP transporter DctM family protein [Burkholderia thailandensis E264] gb|ABC35695.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis E264] Length = 631 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/353 (63%), Positives = 285/353 (80%) Query: 1 MSSRLIELLLRMFGRLRGGLNLIMVTAMAFFSGVSGSKLADVAAVGGILMPAVRQTRQNP 60 MSSRLIELLLR+FGR+RGGL LI + A AFFSGVSGSKLAD+AAVGG++MPAVR +R++P Sbjct: 278 MSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSREDP 337 Query: 61 NEAAGLLAASAIMAETIPPCINMIILGFVANLSIGGLFLAGILPALAMAIALCIMAYYTG 120 NEAA LLA SA+MAETIPPC+NMII+GFVAN+SI GLFLAG++PA +A L +A G Sbjct: 338 NEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVICG 397 Query: 121 RKVDVSVVFIKPRPMGKLIGGALVGLIMIVMIGKGVASGVATSTEISSFAVVYAIVVGWL 180 R+++++ PR L+GGALV L+MI MIGKGV SG+ATSTE+S+FAVVYA++VG L Sbjct: 398 RRINLADALPHPRAWMPLLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVGGL 457 Query: 181 AFRELNRKVLVKLFVDAASMSGMVLFIVAAASSVAYALTVEQIPHALAELMVSLAHDYGS 240 AFREL K +V++FV +ASM+ +LFIVAAASSV++ALT+EQIP +++ M+ AH YG Sbjct: 458 AFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQYGP 517 Query: 241 WMFILISVLALILFGAVLEGAPALIIFGPLLTPIAVQLGYNPLHFAIILVISMGIGLFSP 300 F+L+SVL +I+FGAVLEGAPALIIFGPLLTPIA QLG NPLHF ++V++MG+GLF+P Sbjct: 518 TTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLFAP 577 Query: 301 PFGLGMYATCAIAQVRLQDVVKPYLKYLAILLVTLVVIIVWPDLSLWLPRRFG 353 P GLG++ATCAI ++ V +P LKYL +L LV +I+ P SLWLP R G Sbjct: 578 PIGLGLFATCAITGTEMKAVARPMLKYLLVLCTALVALILVPSFSLWLPTRLG 630 >ref|ZP_02370497.1| TRAP transporter, DctM subunit subfamily, putative [Burkholderia thailandensis TXDOH] Length = 608 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/353 (63%), Positives = 285/353 (80%) Query: 1 MSSRLIELLLRMFGRLRGGLNLIMVTAMAFFSGVSGSKLADVAAVGGILMPAVRQTRQNP 60 MSSRLIELLLR+FGR+RGGL LI + A AFFSGVSGSKLAD+AAVGG++MPAVR +R++P Sbjct: 255 MSSRLIELLLRIFGRVRGGLGLITIMATAFFSGVSGSKLADIAAVGGVVMPAVRLSREDP 314 Query: 61 NEAAGLLAASAIMAETIPPCINMIILGFVANLSIGGLFLAGILPALAMAIALCIMAYYTG 120 NEAA LLA SA+MAETIPPC+NMII+GFVAN+SI GLFLAG++PA +A L +A G Sbjct: 315 NEAAALLACSAVMAETIPPCVNMIIMGFVANISIAGLFLAGVVPAAVLAATLAAVAVICG 374 Query: 121 RKVDVSVVFIKPRPMGKLIGGALVGLIMIVMIGKGVASGVATSTEISSFAVVYAIVVGWL 180 R+++++ PR L+GGALV L+MI MIGKGV SG+ATSTE+S+FAVVYA++VG L Sbjct: 375 RRINLADALPHPRAWMPLLGGALVALVMITMIGKGVTSGIATSTEVSAFAVVYALIVGGL 434 Query: 181 AFRELNRKVLVKLFVDAASMSGMVLFIVAAASSVAYALTVEQIPHALAELMVSLAHDYGS 240 AFREL K +V++FV +ASM+ +LFIVAAASSV++ALT+EQIP +++ M+ AH YG Sbjct: 435 AFRELTPKSVVRVFVRSASMASSILFIVAAASSVSFALTIEQIPALVSDSMIVFAHQYGP 494 Query: 241 WMFILISVLALILFGAVLEGAPALIIFGPLLTPIAVQLGYNPLHFAIILVISMGIGLFSP 300 F+L+SVL +I+FGAVLEGAPALIIFGPLLTPIA QLG NPLHF ++V++MG+GLF+P Sbjct: 495 TTFLLLSVLIMIVFGAVLEGAPALIIFGPLLTPIAAQLGINPLHFGTVIVVAMGLGLFAP 554 Query: 301 PFGLGMYATCAIAQVRLQDVVKPYLKYLAILLVTLVVIIVWPDLSLWLPRRFG 353 P GLG++ATCAI ++ V +P LKYL +L LV +I+ P SLWLP R G Sbjct: 555 PIGLGLFATCAITGTEMKAVARPMLKYLLVLCTALVALILVPSFSLWLPTRLG 607