BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0043.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001770730.1| hydratase/decarboxylase [Methylobacterium sp...   105   2e-21
ref|YP_003776739.1| 2-keto-4-pentenoate hydratase [Herbaspirillu...    97   9e-19
ref|YP_004618283.1| 2-keto-4-pentenoate hydratase [Ramlibacter t...    96   2e-18
ref|ZP_06894820.1| 2-keto-4-pentenoate hydratase family protein ...    96   2e-18
ref|YP_002942039.1| 2-oxopent-4-enoate hydratase [Variovorax par...    95   3e-18

>ref|YP_001770730.1| hydratase/decarboxylase [Methylobacterium sp. 4-46]
 gb|ACA18296.1| Hydratase/decarboxylase [Methylobacterium sp. 4-46]
          Length = 238

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 9   PAIELVSSRYTEYPAANPLAGLADALSNCAFIYGP-GRSDLGQIDQSIQHAELYFNGLEV 67
           P IE+V +R   +  A+PLA LAD  S+ A I GP  R D   +D     A+L  +G  V
Sbjct: 112 PVIEVVETRLDGWGEADPLARLADLQSHGALILGPPSRLDPAALDLRTVAADLSVDGRAV 171

Query: 68  ARTVGGNPVVDIWPLVTWLVNHLCERCGGIKAGQFVTTGSCTGLLFADKGSSVNALLQNI 127
           A T GGNP  D+W L+ WL +H   R   ++AGQ VTTGSCTG+LF  +G+ V A L  I
Sbjct: 172 AATRGGNPAEDVWRLLAWLADHAAARGRPLRAGQVVTTGSCTGMLFCAQGTRVAAELAGI 231

Query: 128 GKVDISF 134
           G V + F
Sbjct: 232 GAVAMRF 238


>ref|YP_003776739.1| 2-keto-4-pentenoate hydratase [Herbaspirillum seropedicae SmR1]
 gb|ADJ64831.1| 2-keto-4-pentenoate hydratase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 247

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 72/132 (54%), Gaps = 11/132 (8%)

Query: 9   PAIELVSSRYTEYPAANPLAGLADALSNCAFIYG-----PGRSDLGQIDQSIQHAELYFN 63
           PAIE+V +R    P  NP AG+AD  S+ A + G     P    L QI+     A L  +
Sbjct: 121 PAIEVVETRLGHPPCTNPWAGMADLQSHGALVTGAPQALPDLLSLRQIE-----ASLSID 175

Query: 64  GLEVARTVGGNPVVDIWPLVTWLVNHLCERCGGIKAGQFVTTGSCTGLLFADKGSSVNAL 123
           G +V+ T GGNP  D+WPL+ WL  H   R    +AGQ +TTGSCTGL  A  G  V A 
Sbjct: 176 GQQVSHTTGGNPA-DLWPLLGWLALHCARRGQPWRAGQIITTGSCTGLQMARGGRRVEAA 234

Query: 124 LQNIGKVDISFA 135
           L  IG V + FA
Sbjct: 235 LHGIGAVWLDFA 246


>ref|YP_004618283.1| 2-keto-4-pentenoate hydratase [Ramlibacter tataouinensis TTB310]
 gb|AEG92264.1| 2-keto-4-pentenoate hydratase-like protein [Ramlibacter
           tataouinensis TTB310]
          Length = 250

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 76/140 (54%), Gaps = 11/140 (7%)

Query: 1   VAAVATVHPAIELVSSRYTEYPAANPLAGLADALSNCAFIYG------PGRSDLGQIDQS 54
           VAAV  + PAIE+V +R  E   + P   LAD  S+   + G      P R DL  +   
Sbjct: 116 VAAVDALLPAIEVVDTRLAEGRQSPPPVQLADLQSHDVLVTGAASALKPARLDLASL--- 172

Query: 55  IQHAELYFNGLEVARTVGGNPVVDIWPLVTWLVNHLCERCGGIKAGQFVTTGSCTGLLFA 114
                L+F+G   A TVGG+P  DIW L+ WL  H   R   ++AGQ VTTGSCTGLLFA
Sbjct: 173 --RCRLWFDGSPAADTVGGHPTRDIWSLLAWLAVHCEARGLPLRAGQVVTTGSCTGLLFA 230

Query: 115 DKGSSVNALLQNIGKVDISF 134
              + V   +  +G+V +SF
Sbjct: 231 PASARVRGEIDGLGEVALSF 250


>ref|ZP_06894820.1| 2-keto-4-pentenoate hydratase family protein [Roseomonas cervicalis
           ATCC 49957]
 gb|EFH13502.1| 2-keto-4-pentenoate hydratase family protein [Roseomonas cervicalis
           ATCC 49957]
          Length = 251

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%)

Query: 1   VAAVATVHPAIELVSSRYTEYPAANPLAGLADALSNCAFIYGPGRSDLGQIDQSIQHAEL 60
           +AAVAT+H  IE+V +R+T     +PL+  AD  ++ A + GP  +D   ++ +     L
Sbjct: 117 LAAVATMHATIEIVDTRFTALHVTDPLSHTADQGNHGALVVGPAVTDWHGVEPTQLPVTL 176

Query: 61  YFNGLEVARTVGGNPVVDIWPLVTWLVNHLCERCGGIKAGQFVTTGSCTGLLFADKGSSV 120
            FNG    + VGGN   D   ++ WL N    R GG+KAG  +TTGSCTGLL    G+ V
Sbjct: 177 RFNGEVAVQHVGGNTAGDPVRMLVWLANGAAHRHGGLKAGMVITTGSCTGLLHVPAGTVV 236

Query: 121 NALLQNIGKVDISFA 135
            A+    G V+ + A
Sbjct: 237 QAVFDGFGSVETTIA 251


>ref|YP_002942039.1| 2-oxopent-4-enoate hydratase [Variovorax paradoxus S110]
 gb|ACS16773.1| 2-oxopent-4-enoate hydratase [Variovorax paradoxus S110]
          Length = 254

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 3/134 (2%)

Query: 3   AVATVHPAIELVSSRYTEYPAANPLAGLADALSNCAFIYGPGRSDLGQIDQSIQHAE--L 60
           AV +V P IE+V +R  ++  A+  A LAD LS+ A + G  R         +Q AE  L
Sbjct: 122 AVESVLPVIEVVETRLADWFGAHANALLADLLSHGALVLG-QRQPFAPAWFDLQRAEAAL 180

Query: 61  YFNGLEVARTVGGNPVVDIWPLVTWLVNHLCERCGGIKAGQFVTTGSCTGLLFADKGSSV 120
           +F+G  VA TVG +P  D   L+ WL NH   R  G+KAGQ VT+GSCTG+LFA  G++V
Sbjct: 181 HFDGQTVAHTVGEHPSPDAGALLVWLANHCAARGAGLKAGQIVTSGSCTGMLFASAGTAV 240

Query: 121 NALLQNIGKVDISF 134
              +  +  V +SF
Sbjct: 241 RVEIGELAPVALSF 254