BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0035.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D... 598 e-169 emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan... 568 e-159 ref|YP_004754592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-di... 562 e-158 ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-di... 555 e-156 ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-dia... 516 e-144 >ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 330/490 (67%), Positives = 376/490 (76%), Gaps = 17/490 (3%) Query: 1 MQTTLEQLKQWLDGA-----------TVHNDAGALADVSINGATTDSRAVVPGNLFIALR 49 M+ Q+ +WL A V+ AG LA +N TDSRAV PGN+F+ALR Sbjct: 2 MRFDFRQMLEWLRTAEAAASAHTVPGVVNAPAGLLA---LNDVVTDSRAVKPGNVFVALR 58 Query: 50 GERFDAHDFLDAVAAQGAAAVVVERVPAGLKIPAIVVSDTRVALGRIARHWRQQFKLPLI 109 GERFDAHDFLDAVA QGAAAVVVERVP GL +PAIVV DTR ALG+IA WR Q ++P+I Sbjct: 59 GERFDAHDFLDAVADQGAAAVVVERVPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVI 118 Query: 110 AVTGSNGKTTVKEMIASILAADFGEDRSMATRGNFNNEIGVPLTLFRLQPQHQAAVVELG 169 VTGSNGKTTVKEMIA+ILAA FGE+ + TRGNFNNEIGVPLTLFRL+ QHQAAV+E+G Sbjct: 119 GVTGSNGKTTVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMG 178 Query: 170 MNHPGEIAVLAEIARPTLALVNNAQREHQEFMATVEAVARENGAVFAALPADGIAVFPAE 229 MNHPGEIAVL+ IA PTL LVNNAQREHQEFMATVEAVARENGAV LPADG+AVFPA+ Sbjct: 179 MNHPGEIAVLSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPAD 238 Query: 230 DDYAWVWREIAGARPVISFGLNPDANVSATYQVREFGSAIAVNAD-IDGRSQQFGIKLAA 288 DD+ +WRE AGAR V+SFGL+ A+VSA+YQ FGS + V + QF ++LAA Sbjct: 239 DDFTPLWREEAGARRVLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAA 298 Query: 289 VGEHNVRNALAATACALGAGIAVAAIVRGLEAFAPVNGRLQRKAAASGALVIDDTYNANP 348 VGEHNVRNALAA ACALGAGIA+ A+VRGLE+FAPVNGRLQRK A SGALVIDDTYNANP Sbjct: 299 VGEHNVRNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEARSGALVIDDTYNANP 358 Query: 349 DSVRAAIDVLAQTVAPRVLALGDMGEVGNEGPKFHREIGAYARARGIEHFFGFGDAMRDA 408 DSVRAAIDVLA PRVL LGDMGEVG++GP+FH EIGAYAR+RGI FFG G+ + A Sbjct: 359 DSVRAAIDVLAAIAGPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHA 418 Query: 409 IEAYNSAPGAAFPARHFDTVDAIGAATREVAVAAATVLVKGSRFMKMERVVQHLVGAQLQ 468 + AY + P A HFD + A+ AA + A ATVLVKGSRFMKMERVVQHLV + Sbjct: 419 VTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVNVESP 478 Query: 469 TGAPLHQETH 478 T QETH Sbjct: 479 TQH--QQETH 486 >emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/468 (62%), Positives = 352/468 (75%), Gaps = 16/468 (3%) Query: 1 MQTTLEQLKQWLDGATVHNDAGALADVSINGATTDSRAVVPGNLFIALRGERFDAHDFLD 60 M+ TL L+ + AT A D + +G +TDSR V GNLF+ALRGERFDAH FL Sbjct: 1 MKATLNLLQTAIKNAT------ATGDAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLP 54 Query: 61 AVAAQGAAAVVVERVPAGLKIPAIVVSDTRVALGRIARHWRQQFKLPLIAVTGSNGKTTV 120 VA + AAVV E++PAGL +PA++V DTR+ALG +A +WR+QF LPLI VTGSNGKTTV Sbjct: 55 QVAERKVAAVVAEKIPAGLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTV 114 Query: 121 KEMIASILAADFGEDRSMATRGNFNNEIGVPLTLFRLQPQHQAAVVELGMNHPGEIAVLA 180 KEMIA+IL A FG D +ATRGNFNN+IGVPLTL RL +AAV+ELGMNHPGEIAVL+ Sbjct: 115 KEMIAAILDAAFGPDNYLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLS 174 Query: 181 EIARPTLALVNNAQREHQEFMATVEAVARENGAVFAALPADGIAVFPAEDDYAWVWREIA 240 IA+PT+ LVNNAQREHQEFM +VEAVA+ENGAV A+LPADG+AVFPA+D + +WR A Sbjct: 175 AIAQPTVGLVNNAQREHQEFMESVEAVAQENGAVLASLPADGVAVFPADDAFTPLWRSYA 234 Query: 241 GARPVISFGLNPDANVSATYQVREFGSAIAVNADIDGRSQQFGIKLAAVGEHNVRNALAA 300 R ++FG + DA+V TY FG+ ++V A +Q+F I L+A G HNVRNALAA Sbjct: 235 AQRKTLTFGFSADADVRCTYAANVFGNDMSVTAG----NQKFTIALSAAGVHNVRNALAA 290 Query: 301 TACALGAGIAVAAIVRGLEAFAPVNGRLQRKAAASGALVIDDTYNANPDSVRAAIDVLAQ 360 AC L GIA AIVRGL+AFAPV+GRLQRK AASGALVIDDTYNANPDSVRAAIDVLAQ Sbjct: 291 IACTLAIGIAPEAIVRGLQAFAPVSGRLQRKLAASGALVIDDTYNANPDSVRAAIDVLAQ 350 Query: 361 TVAPRVLALGDMGEVGNEGPKFHREIGAYARARGIEHFFGFGDAMRDAIEAYNSAPGAAF 420 +PR+L LGDMGEVGN+G ++H EIGAYARA GIEH G+ R + A+ + Sbjct: 351 MASPRILVLGDMGEVGNDGRQYHEEIGAYARANGIEHVLALGELARHTVSAFGAG----- 405 Query: 421 PARHFDTVDAIGAATREVAVAAATVLVKGSRFMKMERVVQHLVGAQLQ 468 A+H+D+V+A+ A + A ATVLVKGSRFMKMERVVQHL+G Q Q Sbjct: 406 -AQHYDSVEALNDALAAIFAADATVLVKGSRFMKMERVVQHLLGQQTQ 452 >ref|YP_004754592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Collimonas fungivorans Ter331] gb|AEK63769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Collimonas fungivorans Ter331] Length = 472 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 306/475 (64%), Positives = 346/475 (72%), Gaps = 21/475 (4%) Query: 1 MQTTLEQLKQWLDGATVHNDAGALAD-VSINGATTDSRAVVPGNLFIALRGERFDAHDFL 59 M +L QL+ WL +V GA D V +NG TDSRAV PG LF+ALRGERFDAHDFL Sbjct: 1 MNVSLSQLQAWLGLPSV----GAGQDQVVVNGLCTDSRAVTPGCLFVALRGERFDAHDFL 56 Query: 60 DAVAAQGAAAVVVERVPA---GLKIPAIVVSDTRVALGRIARHWRQQFKLPLIAVTGSNG 116 D V AQG AAVVVER PA L +PA+VV+DTRVALG I + WRQQF LPLIAVTGSNG Sbjct: 57 DQVIAQGVAAVVVERTPATLTALAVPALVVNDTRVALGTIGQRWRQQFTLPLIAVTGSNG 116 Query: 117 KTTVKEMIASILAADFGEDRSMATRGNFNNEIGVPLTLFRLQPQHQAAVVELGMNHPGEI 176 KTTVKEMIA+IL A FG D+S+ATRGNFNNEIGVPLTL RL HQAAV+ELGMNHPGEI Sbjct: 117 KTTVKEMIAAILVAAFGVDKSLATRGNFNNEIGVPLTLLRLGAGHQAAVIELGMNHPGEI 176 Query: 177 AVLAEIARPTLALVNNAQREHQEFMATVEAVARENGAVFAALPADGIAVFPAEDDYAWVW 236 A+L +A PT+ALVNNAQREHQEFMA+V AVA ENG+V LPA GIAVFPA+D + +W Sbjct: 177 ALLTALAEPTVALVNNAQREHQEFMASVAAVAEENGSVIRGLPASGIAVFPADDPFTGLW 236 Query: 237 REIAGARP-VISFGLNPDANVSATYQ--VREFGSAIAVNADIDGRSQQFGIKLAAVGEHN 293 R A + ISFGL DA+VS +Y FGS + V G Q F ++LAA GEHN Sbjct: 237 RGYAADKAGSISFGLTADADVSCSYTGAAHGFGSDLIVTFATAGGPQIFALQLAAAGEHN 296 Query: 294 VRNALAATACALGAGIAVAAIVRGLEAFAPVNGRLQRK----AAASGALVIDDTYNANPD 349 VRNALAA AC L GI VAAI RGLE FAPV+GRLQRK A +GALVIDDTYNANPD Sbjct: 297 VRNALAAIACTLAIGIDVAAIKRGLETFAPVSGRLQRKLATAAGCAGALVIDDTYNANPD 356 Query: 350 SVRAAIDVLAQTVAPRVLALGDMGEVGNEGPKFHREIGAYARARGIEHFFGFGDAMRDAI 409 SVRAAIDVLAQ+ APR+L LGDMGEVGNEG +FH+EIGAYA+ RGI F GD DA Sbjct: 357 SVRAAIDVLAQSAAPRLLVLGDMGEVGNEGREFHQEIGAYAQQRGITQLFTLGDLAADAS 416 Query: 410 EAYNSAPGAAFPARHFDTVDAIGAATREVAVAAATVLVKGSRFMKMERVVQHLVG 464 A+ A+HF+ + A+ AA TVL+KGSRFMKMER VQHL G Sbjct: 417 AAFGP------QAQHFNDIAALLAALDATMTPDTTVLIKGSRFMKMERAVQHLAG 465 >ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 297/468 (63%), Positives = 357/468 (76%), Gaps = 16/468 (3%) Query: 1 MQTTLEQLKQWLDGATVHNDAGALADVSINGATTDSRAVVPGNLFIALRGERFDAHDFLD 60 M +TL L+ L+GA + AD + +G +TDSR V GNLF+ALRGERFDAHDFL Sbjct: 1 MNSTLAILQSALNGARM------TADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLP 54 Query: 61 AVAAQGAAAVVVERVPAGLKIPAIVVSDTRVALGRIARHWRQQFKLPLIAVTGSNGKTTV 120 VA + AA+V E VP GL +PA++V DTRVALG+IA +WR+QFK+PLI VTGSNGKTTV Sbjct: 55 QVAERNVAAIVAETVPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTV 114 Query: 121 KEMIASILAADFGEDRSMATRGNFNNEIGVPLTLFRLQPQHQAAVVELGMNHPGEIAVLA 180 KEMIA+IL A G D +ATRGNFNN+IGVPLTL RLQ +AAV+ELGMNHPGEIAVL+ Sbjct: 115 KEMIAAILEAACGVDNYLATRGNFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLS 174 Query: 181 EIARPTLALVNNAQREHQEFMATVEAVARENGAVFAALPADGIAVFPAEDDYAWVWREIA 240 IA PT+ LVNNAQREHQEFMA+VEAVA+ENGAV A LPADGIAVFPA+D++ +WR++A Sbjct: 175 AIAEPTVGLVNNAQREHQEFMASVEAVAQENGAVLAGLPADGIAVFPADDEFTPLWRQLA 234 Query: 241 GARPVISFGLNPDANVSATYQVREFGSAIAVNADIDGRSQQFGIKLAAVGEHNVRNALAA 300 R V++FG + DA+V +Y FGS + ++A GR QQF + L+A G HNVRNALAA Sbjct: 235 AQRKVLTFGFSDDADVRCSYSANAFGSDMEISA---GR-QQFTVALSAAGVHNVRNALAA 290 Query: 301 TACALGAGIAVAAIVRGLEAFAPVNGRLQRKAAASGALVIDDTYNANPDSVRAAIDVLAQ 360 ACAL GIA AI RGL+AFAPV+GRLQRK AA+GALVIDDTYNANPDSVRAAIDVLAQ Sbjct: 291 IACALAIGIATDAIARGLQAFAPVSGRLQRKLAANGALVIDDTYNANPDSVRAAIDVLAQ 350 Query: 361 TVAPRVLALGDMGEVGNEGPKFHREIGAYARARGIEHFFGFGDAMRDAIEAYNSAPGAAF 420 APR+L LG+MGEVGN+G ++H EIGAYARA+ IE+ GD R A A+ + Sbjct: 351 MSAPRILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLTLGDLTRYAASAFGAG----- 405 Query: 421 PARHFDTVDAIGAATREVAVAAATVLVKGSRFMKMERVVQHLVGAQLQ 468 A H+D+V+ + A + A ATVLVKGSRFMKMERVVQHL+G Q Q Sbjct: 406 -ANHYDSVEELNDALAGIFTADATVLVKGSRFMKMERVVQHLLGQQTQ 452 >ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/439 (61%), Positives = 334/439 (76%), Gaps = 19/439 (4%) Query: 1 MQTTLEQLKQWLDGATVHNDAGALADVSINGATTDSRAVVPGNLFIALRGERFDAHDFLD 60 M++TL L+ WL GA + DA S +G +TDSR G+LF+ALRGE+FDAH F+D Sbjct: 1 MKSTLSDLQPWLAGARANGDA------SFDGISTDSRTAPAGSLFVALRGEKFDAHKFMD 54 Query: 61 AVAAQGAAAVVVERVPAGLKIPAIVVSDTRVALGRIARHWRQQFKLPLIAVTGSNGKTTV 120 +AA+G AAVVVERVP G++IPA++V DTR+ALG IARHWR+QF LP+I VTGSNGKTTV Sbjct: 55 GLAARGVAAVVVERVPKGMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTV 114 Query: 121 KEMIASILAADFGEDRSMATRGNFNNEIGVPLTLFRLQPQHQAAVVELGMNHPGEIAVLA 180 KEM+A+IL G D +ATRGNFNN+IGVPLT+ RL +AAV+ELGMNHPGEIA L+ Sbjct: 115 KEMLAAILGTALGADHFLATRGNFNNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLS 174 Query: 181 EIARPTLALVNNAQREHQEFMATVEAVARENGAVFAALPADGIAVFPAEDDYAWVWREIA 240 IA+PTL LVNNAQREHQEFM +VEAVA+ENGAV +ALPA+GIAVFPA+D YA +WR +A Sbjct: 175 MIAQPTLGLVNNAQREHQEFMVSVEAVAKENGAVISALPANGIAVFPADDPYAPLWRGLA 234 Query: 241 ---GARPVISFGLNPDANVSATYQVREFGSAIAVNADIDGRSQQFGIKLAAVGEHNVRNA 297 G R V++FG + DA+VS +++ FGS + V A + F +K+ A G+HNVRNA Sbjct: 235 TAIGQRKVMTFGFSDDADVSCSWKADGFGSELQVRAG----ERTFTVKVDAAGQHNVRNA 290 Query: 298 LAATACALGAGIAVAAIVRGLEAFAPVNGRLQRKAAASGALVIDDTYNANPDSVRAAIDV 357 LAA ACALG GI + AIVRGL AFAPVNGRLQRK AASGA VIDDTYNANPDSVRAAI+V Sbjct: 291 LAAIACALGIGIGIDAIVRGLAAFAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEV 350 Query: 358 LAQTVAPRVLALGDMGEVGNEGPKFHREIGAYARARGIEHFFGFGDAMRDAIEAYNSAPG 417 LAQ +PRVL LGDMGEVGN+G ++H E+GAYAR RGI+H F G + + A+ + Sbjct: 351 LAQAPSPRVLVLGDMGEVGNDGRQYHEEVGAYARGRGIQHLFTLGQLAQHSGSAFGAH-- 408 Query: 418 AAFPARHFDTVDAIGAATR 436 ARHF+ ++A+ A R Sbjct: 409 ----ARHFNDIEALPAGAR 423