BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0006.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003050361.1| type II secretion system protein [Methylovor... 154 5e-36 ref|YP_003048031.1| type II secretion system protein [Methyloten... 149 2e-34 ref|ZP_01127075.1| type II secretion system protein F [Nitrococc... 144 3e-33 ref|YP_003673563.1| Type II secretion system F domain-containing... 140 5e-32 ref|YP_159489.1| type IV fimbrial biogenesis protein, pilC [Arom... 138 2e-31 >ref|YP_003050361.1| type II secretion system protein [Methylovorus glucosetrophus SIP3-4] ref|YP_004039029.1| type II secretion system protein [Methylovorus sp. MP688] gb|ACT49834.1| type II secretion system protein [Methylovorus glucosetrophus SIP3-4] gb|ADQ83793.1| type II secretion system protein [Methylovorus sp. MP688] Length = 403 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 123/223 (55%), Gaps = 69/223 (30%) Query: 2 LVTSIIMIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTK-----------------YW 44 ++T++IMI+V+P+FKE+F SFGA LP PTLIV+AISDF + Y Sbjct: 181 IITAVIMIFVIPAFKELFSSFGADLPAPTLIVMAISDFFVEYWWAIFGAIGGGVWFFFYS 240 Query: 45 WMMA---------------------------------ATVGGAGASLAAAIE------GT 65 W + +T+ AG L A++ G Sbjct: 241 WKRSIKMQATMDRLVLKIPVFGELIRKATIARFARTLSTMFAAGVPLVEALDSVAGASGN 300 Query: 66 RL-------------XGASLAAAIEGTRLFPELVGQMVAIGEESGALDQMLAKVADFYEI 112 R+ G SL A++ +FP +V QMVAIGEESGALD ML+KVADFYE Sbjct: 301 RVYYEATKQIQSEISTGTSLTVAMQNVEVFPNMVLQMVAIGEESGALDSMLSKVADFYEA 360 Query: 113 EVDEAVATISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI 155 EVD+AV +S+LMEP IM+VLG +IGGLVIAMYLPIFK+G V+ Sbjct: 361 EVDDAVEALSSLMEPIIMVVLGTLIGGLVIAMYLPIFKMGQVV 403 >ref|YP_003048031.1| type II secretion system protein [Methylotenera mobilis JLW8] gb|ACT47504.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 407 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 121/223 (54%), Gaps = 69/223 (30%) Query: 2 LVTSIIMIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTK-----------------YW 44 ++T++IMI+VVP+FKE+F SFGA LP PTL+V+AIS+F Y Sbjct: 183 IITAVIMIFVVPAFKELFSSFGADLPGPTLVVMAISEFFVNWWWAIFGSIGFGLWFFFYT 242 Query: 45 WMMA---------------------------------ATVGGAGASLAAAIE------GT 65 W + AT+ AG L A++ G Sbjct: 243 WKRSLSMQATMDRLMLKVPVFGDLVRKATIARFARTMATMFSAGVPLVEALDSVAGASGN 302 Query: 66 RL-------------XGASLAAAIEGTRLFPELVGQMVAIGEESGALDQMLAKVADFYEI 112 R+ G SL A++ +FP +V QM AIGEESGALD ML KVADFYE Sbjct: 303 RVYYDATKRIQSEISTGTSLTVAMQNAEVFPNMVLQMTAIGEESGALDSMLGKVADFYEG 362 Query: 113 EVDEAVATISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI 155 EVD+AV +S+LMEP IM+VLGV+IGGLV+A+YLPIFKLG V+ Sbjct: 363 EVDDAVEALSSLMEPIIMVVLGVLIGGLVVALYLPIFKLGQVV 405 >ref|ZP_01127075.1| type II secretion system protein F [Nitrococcus mobilis Nb-231] gb|EAR21820.1| type II secretion system protein F [Nitrococcus mobilis Nb-231] Length = 409 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 69/223 (30%) Query: 2 LVTSIIMIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTKYWWMMAATVGG-------- 53 +VT+I++I+VVP F+E+F FGA LP T++VI +SD +YWW++ A +G Sbjct: 187 IVTAILLIFVVPQFEELFRGFGADLPAFTVLVIQLSDAFQQYWWLILAGLGAATTAFAQA 246 Query: 54 ------------------------------------------AGASLAAAIE------GT 65 AG L A+E G Sbjct: 247 HKRSLRVAYAVDRVSLRIPIIGAILRKAALARFARTLSTMFAAGVPLVDALESVAGATGN 306 Query: 66 RLXGASLAAAIE-------------GTRLFPELVGQMVAIGEESGALDQMLAKVADFYEI 112 R+ G ++ A E T LFP ++ QM+AIGEE+G+LD MLAKVADFYE Sbjct: 307 RVYGQAVRAMREEVTAGQPLQWAASRTELFPHMMVQMIAIGEEAGSLDAMLAKVADFYEE 366 Query: 113 EVDEAVATISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI 155 EVD A+ ++S+L+EP IM +LG+++GGLVIAMYLPIFKLG+V+ Sbjct: 367 EVDNAIDSLSSLLEPLIMAILGILVGGLVIAMYLPIFKLGAVV 409 >ref|YP_003673563.1| Type II secretion system F domain-containing protein [Methylotenera versatilis 301] gb|ADI28986.1| Type II secretion system F domain protein [Methylotenera versatilis 301] Length = 405 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 115/217 (52%), Gaps = 69/217 (31%) Query: 8 MIWVVPSFKEVFGSFGAALPLPTLIVIAISDFLTKY------------------------ 43 MI+V+P+FK +F FGA LP PTLIV+AISD ++ Sbjct: 189 MIFVIPAFKTLFDGFGAELPAPTLIVMAISDIFVQWWWAIFGSIGFGIWFFFYTWKRSLS 248 Query: 44 --------------------------WWMMAATVGGAGASLAAAIE------GTRL---- 67 W AT+ AG L A++ G R+ Sbjct: 249 MQATMDRLILKVPVFGPLIRKATIARWARTLATMFSAGVPLVEALDSVAGASGNRVYYDA 308 Query: 68 ---------XGASLAAAIEGTRLFPELVGQMVAIGEESGALDQMLAKVADFYEIEVDEAV 118 G SL A++ T +FP +V QM AIGEESGALD ML+KVADF+E EVD+AV Sbjct: 309 TKKVQSEISTGTSLTVAMQNTDVFPNMVLQMTAIGEESGALDAMLSKVADFFEAEVDDAV 368 Query: 119 ATISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI 155 +++LMEP IM+VLGV+IGGLVIAMY+PIFK+GSV+ Sbjct: 369 DALASLMEPVIMVVLGVLIGGLVIAMYMPIFKMGSVV 405 >ref|YP_159489.1| type IV fimbrial biogenesis protein, pilC [Aromatoleum aromaticum EbN1] emb|CAI08588.1| type IV fimbrial biogenesis protein,PilC [Aromatoleum aromaticum EbN1] Length = 411 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 112/217 (51%), Gaps = 69/217 (31%) Query: 8 MIWVVPSFKEVFGSFGAALPLPTLIVIAIS------------------------------ 37 M++VVP FK+VF SFGA LP PTL+VIAIS Sbjct: 195 MLFVVPEFKKVFTSFGADLPAPTLMVIAISDAFVAYWYILFGIIAATVIGIGAMYKRSDA 254 Query: 38 ----------------DFLTK----YWWMMAATVGGAGASLAAAIEG------------- 64 D + K W AT+ AG L A++ Sbjct: 255 MQIAVDRAVLQLPVVGDIIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNHVYVTA 314 Query: 65 TRL------XGASLAAAIEGTRLFPELVGQMVAIGEESGALDQMLAKVADFYEIEVDEAV 118 TR G SL A++ +FP +V QMV+IGEESG LD ML KVADF+E EVD+AV Sbjct: 315 TRQIQTEVSTGTSLTVAMQNATVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAV 374 Query: 119 ATISTLMEPFIMLVLGVVIGGLVIAMYLPIFKLGSVI 155 A +STL+EP IM+ LGVVIGGLV+AMYLPIFKLG V+ Sbjct: 375 AGLSTLLEPIIMVFLGVVIGGLVVAMYLPIFKLGQVV 411