BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0001.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751090.1| cytochrome c-type biogenesis protein DsbD, p... 335 3e-90 ref|YP_003773577.1| thiol:disulfide interchange transmembrane pr... 326 2e-87 ref|YP_001355070.1| thiol:disulfide interchange protein [Janthin... 291 4e-77 ref|YP_001101368.1| thiol:disulfide interchange protein, cytochr... 260 9e-68 ref|YP_001791042.1| protein-disulfide reductase [Leptothrix chol... 242 3e-62 >ref|YP_004751090.1| cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase [Collimonas fungivorans Ter331] gb|AEK60267.1| Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase [Collimonas fungivorans Ter331] Length = 613 Score = 335 bits (859), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 160/216 (74%), Positives = 180/216 (83%) Query: 10 RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69 RAG WMESVKRFFGVLMLA ALWMV+PVIP A + GWAALGI YGA+LLW + W A+ Sbjct: 397 RAGAWMESVKRFFGVLMLAVALWMVAPVIPVLAQMLGWAALGIGYGAFLLWGRSSAWFAK 456 Query: 70 ACGLAFAALGVLQLVSVATGGRDPLAPLSHLGGGKPAAHTDFVRVRSVAELDAALAQTGG 129 A G+ F GV+QLV +GGRD LAPL+HLGG + +AH FVRV+SVAELDAALAQT G Sbjct: 457 AFGVVFMVCGVVQLVGGISGGRDVLAPLAHLGGAQQSAHAQFVRVKSVAELDAALAQTNG 516 Query: 130 KPALLDFYADWCVSCKEMEKFTFTDPRVREKFARMVLLQIDVTANNADDKAMLKRFQLFG 189 KPALLDFYADWCVSCKEMEKFTFTDPRV+ +F M+LLQIDVTANNADDKAMLKRF LFG Sbjct: 517 KPALLDFYADWCVSCKEMEKFTFTDPRVQARFGEMILLQIDVTANNADDKAMLKRFNLFG 576 Query: 190 PPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQVLT 225 PPGII FDGQGRE+ RVIGYQ+A++FL+SL VL Sbjct: 577 PPGIIFFDGQGREVPQGRVIGYQDADKFLRSLSVLN 612 >ref|YP_003773577.1| thiol:disulfide interchange transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61669.1| thiol:disulfide interchange transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 157/219 (71%), Positives = 181/219 (82%), Gaps = 4/219 (1%) Query: 10 RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69 RAG WM++VKRFFGVLML TALWM+SPVIPAW VAGWAALG+ YGA+LLW++P W AR Sbjct: 382 RAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWAALGVGYGAFLLWTRPAGWIAR 441 Query: 70 ACGLAFAALGVLQLVSVATGGRDPLAPLSHLGGGKPAAH-TDFVRVRSVAELDAALAQTG 128 A GL LG+LQLVS ATGGRDPLAPLSHL G AAH TDFVR+RS AELDAAL Q Sbjct: 442 AFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAHATDFVRIRSSAELDAALQQNA 501 Query: 129 G---KPALLDFYADWCVSCKEMEKFTFTDPRVREKFARMVLLQIDVTANNADDKAMLKRF 185 +P +LDFYADWCVSCKEME+FTFTD RV+ +F +M+LLQIDVTANNADD+AMLKRF Sbjct: 502 AGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQMLLLQIDVTANNADDRAMLKRF 561 Query: 186 QLFGPPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQVL 224 LFGPPGI+ FD GRELA +RVIGYQ+A++F+ +LQ L Sbjct: 562 NLFGPPGIMFFDADGRELASRRVIGYQDADRFISALQNL 600 >ref|YP_001355070.1| thiol:disulfide interchange protein [Janthinobacterium sp. Marseille] gb|ABR89642.1| thiol:disulfide interchange protein [Janthinobacterium sp. Marseille] Length = 600 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 143/215 (66%), Positives = 166/215 (77%), Gaps = 1/215 (0%) Query: 10 RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69 RAG WM++VKRFFGVLMLA ALWMVSPVIPA A + GW AL + YGAYLLW G W ++ Sbjct: 384 RAGMWMDAVKRFFGVLMLAVALWMVSPVIPAVAQMLGWTALLVGYGAYLLWGAKGGWFSK 443 Query: 70 ACGLAFAALGVLQLVSVATGGRDPLAPLSHLGGGKPAAHTDFVRVRSVAELDAALAQTGG 129 A GL LG+LQLV VATGGRD LAPL HL G + F RV++VA+LDAAL Q G Sbjct: 444 AVGLICVVLGMLQLVGVATGGRDALAPLEHLQGERQE-KVSFKRVKTVADLDAALVQAKG 502 Query: 130 KPALLDFYADWCVSCKEMEKFTFTDPRVREKFARMVLLQIDVTANNADDKAMLKRFQLFG 189 K +LDFYADWCVSC EMEK TFTD RVR FA MVLLQ+DVTAN+A+DKAML+RF LFG Sbjct: 503 KHVMLDFYADWCVSCIEMEKLTFTDQRVRTHFAEMVLLQVDVTANDAEDKAMLRRFNLFG 562 Query: 190 PPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQVL 224 PPGII FD G+E+ G RVIG+QNA++F QSL ++ Sbjct: 563 PPGIIFFDKAGQEIQGGRVIGFQNADKFTQSLALI 597 >ref|YP_001101368.1| thiol:disulfide interchange protein, cytochrome c-type biogenesis, electron carrier, N-terminal interacts with and activates DsbC [Herminiimonas arsenicoxydans] emb|CAL63247.1| Thiol:disulfide interchange protein dsbD precursor (Protein-disulfide reductase) (Disulfide reductase) [Herminiimonas arsenicoxydans] Length = 586 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 143/218 (65%), Positives = 165/218 (75%), Gaps = 7/218 (3%) Query: 10 RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69 R G WM VKRFFGVLMLA A+WM+SPVIPA + AALG+AYGAYLLW G W A+ Sbjct: 370 RTGAWMNGVKRFFGVLMLALAIWMISPVIPAVVQMLALAALGLAYGAYLLWGAKGSWFAK 429 Query: 70 ACGLAFAALGVLQLVSVATGGRDPLAPLSHL---GGGKPAAHTDFVRVRSVAELDAALAQ 126 A GL FA LG +QLV V+TGGRD APL+HL G KP FVRV++ AELDAA+AQ Sbjct: 430 ALGLVFAILGAMQLVGVSTGGRDAWAPLAHLSADGVRKPV----FVRVKTSAELDAAIAQ 485 Query: 127 TGGKPALLDFYADWCVSCKEMEKFTFTDPRVREKFARMVLLQIDVTANNADDKAMLKRFQ 186 GGK +LDFYADWCVSC EMEKFTFTDPRV +FA MVLLQ+DVTANNA DK ML+RF Sbjct: 486 AGGKNVMLDFYADWCVSCIEMEKFTFTDPRVHAQFADMVLLQVDVTANNAYDKEMLRRFN 545 Query: 187 LFGPPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQVL 224 LFGPP II FD G+E+ G RVIG+Q A++F QSL ++ Sbjct: 546 LFGPPAIIFFDKNGQEIRGGRVIGFQKADKFTQSLALI 583 >ref|YP_001791042.1| protein-disulfide reductase [Leptothrix cholodnii SP-6] gb|ACB34277.1| Protein-disulfide reductase [Leptothrix cholodnii SP-6] Length = 649 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/240 (55%), Positives = 156/240 (65%), Gaps = 27/240 (11%) Query: 10 RAGGWMESVKRFFGVLMLATALWMVSPVIPAWAFVAGWAALGIAYGAYLLWSKPGHWAAR 69 +G WMESVKRFFGVL++A ALWMV+PV+P W +A W +L + +YL +P AR Sbjct: 408 HSGAWMESVKRFFGVLLIAVALWMVTPVLPVWLMMAAWGSLMLVSASYLGLLEPLAPTAR 467 Query: 70 -------ACGLAFAALGVLQLVSVATGGRDPLAPLSHL---------------GGGKP-- 105 L A G Q + + +GGR L PLSHL G G+ Sbjct: 468 RSAHLGKGLALVLAIGGAAQWLGMLSGGRSLLQPLSHLVSSVSTDARGAVLADGSGRSSP 527 Query: 106 --AAHTDFVRVRSVAELDAALAQTGGKPALLDFYADWCVSCKEMEKFTFTDPRVREKFAR 163 A F RV+SVAELDA L T GKP +LDFYADWCVSCKE E+FTF DP+V+ K A Sbjct: 528 TQAGEVHFQRVKSVAELDALLL-TAGKPVMLDFYADWCVSCKEFEQFTFRDPQVQAKLAG 586 Query: 164 MVLLQIDVTANNADDKAMLKRFQLFGPPGIILFDGQGRELAGKRVIGYQNAEQFLQSLQV 223 VL+Q DVTAN+ADD+A+LKRFQLFGPPGII FD QGRE AG RVIGYQNAEQFL+SLQ Sbjct: 587 AVLVQADVTANDADDRALLKRFQLFGPPGIIFFDPQGREQAGARVIGYQNAEQFLRSLQT 646