BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0451.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001631233.1| hypothetical protein Bpet2623 [Bordetella pe... 370 e-100 ref|ZP_06687134.1| PepSY-associated membrane protein [Achromobac... 362 5e-98 ref|YP_786556.1| iron-regulated membrane protein [Bordetella avi... 362 5e-98 gb|EFV85130.1| membrane protein [Achromobacter xylosoxidans C54] 359 5e-97 gb|EGP44534.1| PepSY-associated TM helix family protein 3 [Achro... 358 8e-97 >ref|YP_001631233.1| hypothetical protein Bpet2623 [Bordetella petrii DSM 12804] emb|CAP42965.1| putative membrane protein [Bordetella petrii] Length = 391 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/379 (49%), Positives = 247/379 (65%), Gaps = 14/379 (3%) Query: 6 MTTWYRVHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAGTPDASLDRI 65 + TWY VHKWTSLV T+FLL++CLTGLPLIF EI+ + D ++ + G P SLDRI Sbjct: 7 VKTWYLVHKWTSLVCTLFLLVICLTGLPLIFHHEIEHLLDEGKPVAELPEGAPTVSLDRI 66 Query: 66 IAAAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYDTRTATLLSETPAL 125 +A A YPG+++ ++ D++EP+ + + +GH + DTRTA +L + P Sbjct: 67 VAQGQALYPGEYVDYVFLDEDEPQAY-VGLVPELGKAVEKGHAVRVDTRTAEVLYDGPPY 125 Query: 126 ----HGFMHVMLQLHQNLFIGLAGDLLLGVAGLLFLAALVSGVVLYGPYMRKLDFGAVRF 181 FM +ML LH +LF GL G+L LG GLLF+ ALVSGVVLYGP+M+KL+FG VR Sbjct: 126 AEDRFSFMGIMLALHVDLFAGLTGELFLGFMGLLFVVALVSGVVLYGPFMKKLEFGTVRA 185 Query: 182 ARGRRLRWLDLHNLIGVAVLAWMCAVGLTGFINTLSKPLFGLWSAQEMPRLLAQAAQAAQ 241 AR RL+WLDLHNL+G+ L W VGLTG IN LS PLF LW + E+PR+LA Sbjct: 186 ARSTRLKWLDLHNLLGIVTLVWAFVVGLTGVINELSTPLFRLWQSTELPRILAPYQ---- 241 Query: 242 AAKDPKEPQCSSTLSVDAIVAAARRALPDKRISSVVFPGARFGSAQHYTLWTVGNTPLTS 301 P ++ SV A +ALP + +S + +PG +GS HY +W GNTPLTS Sbjct: 242 -----GRPVPTTLASVQDAADTAMKALPGREVSFIAYPGNAYGSPHHYIVWLKGNTPLTS 296 Query: 302 RMFTPILLEACRGRIVSTSTLPWYLKALELSRPLHFGDYGGLPLKIIWALLDLLAIAVLV 361 ++ +P+L++ G + + + +PWYL ALELSRPLHFGDYGG+PLKI+W LLDL+ I VL Sbjct: 297 KLNSPVLVDGVTGELSAVARMPWYLTALELSRPLHFGDYGGMPLKILWTLLDLVTIVVLG 356 Query: 362 SGIYLWIARNYPGTLRPAD 380 SG+YLWIAR R A+ Sbjct: 357 SGLYLWIARRKATDARIAE 375 >ref|ZP_06687134.1| PepSY-associated membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF75984.1| PepSY-associated membrane protein [Achromobacter piechaudii ATCC 43553] Length = 391 Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 185/371 (49%), Positives = 243/371 (65%), Gaps = 18/371 (4%) Query: 6 MTTWYRVHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAGTPDASLDRI 65 + TWY +HKWTSLV T+FLL++CLTGLPL+F EI+ D +S V A TP A+LD++ Sbjct: 7 IKTWYWIHKWTSLVCTIFLLIICLTGLPLVFHHEIEHWLDDAKPLSEVPADTPPANLDKL 66 Query: 66 IAAAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYDTRTATLLSETPAL 125 +A+A YPG+ + ++ +D +EP+ + + MA A GH + D RT +L + P Sbjct: 67 VASALTMYPGEVVDYLFFDPDEPQ-VYVGMAKKPGDGQASGHAVRMDARTGDVLLDGPLY 125 Query: 126 ----HGFMHVMLQLHQNLFIGLAGDLLLGVAGLLFLAALVSGVVLYGPYMRKLDFGAVRF 181 FM +ML LH +LF GL G+L LG GLLF A+VSGVVLYGP+M+KL+FG VR Sbjct: 126 TEDKFSFMGIMLALHVDLFAGLPGELFLGFMGLLFCVAIVSGVVLYGPFMKKLEFGTVRA 185 Query: 182 ARGRRLRWLDLHNLIGVAVLAWMCAVGLTGFINTLSKPLFGLWSAQEMPRLLAQAAQAAQ 241 R RL+WLDLHNL+G+ L W VG TG IN LS PLF LW + E+ R+L Sbjct: 186 TRSTRLKWLDLHNLLGIVTLVWAFVVGFTGVINELSTPLFRLWQSTELVRIL-------- 237 Query: 242 AAKDPKEPQCSSTLSVDAIVAA--ARRALPDKRISSVVFPGARFGSAQHYTLWTVGNTPL 299 +P + Q T A AA A++A+P +S + FPG FGS HY W G+TPL Sbjct: 238 ---EPYKGQTVPTELASAQSAADTAKKAMPGNEVSFIAFPGNAFGSPHHYIAWMRGDTPL 294 Query: 300 TSRMFTPILLEACRGRIVSTSTLPWYLKALELSRPLHFGDYGGLPLKIIWALLDLLAIAV 359 TS++ TP+L++ G + + + +PWYL ALE+SRPLHFGDY GLPLKIIWALLDL+ I V Sbjct: 295 TSKLNTPVLVDGRSGELTTVAKMPWYLTALEVSRPLHFGDYAGLPLKIIWALLDLITIVV 354 Query: 360 LVSGIYLWIAR 370 LVSG+YLWIAR Sbjct: 355 LVSGLYLWIAR 365 >ref|YP_786556.1| iron-regulated membrane protein [Bordetella avium 197N] emb|CAJ49649.1| putative iron-regulated membrane protein [Bordetella avium 197N] Length = 388 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 182/379 (48%), Positives = 243/379 (64%), Gaps = 13/379 (3%) Query: 6 MTTWYRVHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAGTPDASLDRI 65 + TWY VHKWTSLV T+FLL++C+TGLPLIF EID + + + AGTP AS D++ Sbjct: 7 IKTWYWVHKWTSLVCTLFLLIICVTGLPLIFHHEIDDWLNEGKPAAELPAGTPRASADQL 66 Query: 66 IAAAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYDTRTATLLSETPAL 125 A A A YP + + ++ +D E P ++ + M +A GH + D+R+A LL + P Sbjct: 67 AATAQALYPNERIDYIYFDPEAPEQVYVGMTPDPQKSAELGHAVRLDSRSAELLRDGPLY 126 Query: 126 HG----FMHVMLQLHQNLFIGLAGDLLLGVAGLLFLAALVSGVVLYGPYMRKLDFGAVRF 181 F +ML LH +L+ GL G+L LG GLLF AL+SG VLYGP+M+KL+FG VR Sbjct: 127 SADRFSFTGIMLALHTDLYAGLGGELFLGFMGLLFCIALISGAVLYGPFMKKLEFGTVRA 186 Query: 182 ARGRRLRWLDLHNLIGVAVLAWMCAVGLTGFINTLSKPLFGLWSAQEMPRLLAQAAQAAQ 241 R R++WLDLHNL+G+ L W VG TG IN LS PLF LW + LL + + Sbjct: 187 GRSSRIKWLDLHNLLGIVTLVWALVVGFTGVINELSTPLFRLWQLNTLTSLL-EPYRGKP 245 Query: 242 AAKDPKEPQCSSTLSVDAIVAAARRALPDKRISSVVFPGARFGSAQHYTLWTVGNTPLTS 301 + PQ +V AA +ALP I+++ +PG +GS QH+T+W G+TPLTS Sbjct: 246 VPQQVASPQT--------VVEAAAQALPGNTITNIAYPGNLYGSPQHFTVWMRGDTPLTS 297 Query: 302 RMFTPILLEACRGRIVSTSTLPWYLKALELSRPLHFGDYGGLPLKIIWALLDLLAIAVLV 361 ++ TP+L++A G + + + +PWYL LELSRPLHFGDYGGLPLKIIWALLDL+AI VL Sbjct: 298 KLHTPVLVDAVSGELTTVAAMPWYLTMLELSRPLHFGDYGGLPLKIIWALLDLIAIVVLA 357 Query: 362 SGIYLWIARNYPGTLRPAD 380 SG+YLWIAR R A+ Sbjct: 358 SGLYLWIARRKTNDARVAE 376 >gb|EFV85130.1| membrane protein [Achromobacter xylosoxidans C54] Length = 391 Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 185/379 (48%), Positives = 243/379 (64%), Gaps = 14/379 (3%) Query: 6 MTTWYRVHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAGTPDASLDRI 65 + TWY VHKWTSLV T+FLL++CLTGLPL+F EI+ D +S V A TP A+LD++ Sbjct: 7 IKTWYLVHKWTSLVCTIFLLIICLTGLPLVFHHEIEHWLDDAKPLSDVPASTPPANLDKL 66 Query: 66 IAAAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYDTRTATLLSETPAL 125 + +A + YPG+ + ++ +D +EP+ + + MA GH + D RT +L + P Sbjct: 67 VESAKSMYPGEVVDYLFFDPDEPQ-VYVGMAKKPGDGMVSGHAVRMDGRTGDVLLDGPLY 125 Query: 126 ----HGFMHVMLQLHQNLFIGLAGDLLLGVAGLLFLAALVSGVVLYGPYMRKLDFGAVRF 181 FM +ML LH +LF GL G+L LG GLLF A+VSGVVLYGP+M+KL+FG VR Sbjct: 126 TEDKFSFMGIMLALHVDLFAGLPGELFLGFMGLLFCVAIVSGVVLYGPFMKKLEFGTVRA 185 Query: 182 ARGRRLRWLDLHNLIGVAVLAWMCAVGLTGFINTLSKPLFGLWSAQEMPRLLAQAAQAAQ 241 R RL+WLDLHNL+G+ L W VG+TG IN LS PLF LW + E+ R+L + + Sbjct: 186 GRSPRLKWLDLHNLLGIVTLVWAFVVGVTGVINELSTPLFRLWQSTELVRIL----EPYK 241 Query: 242 AAKDPKEPQCSSTLSVDAIVAAARRALPDKRISSVVFPGARFGSAQHYTLWTVGNTPLTS 301 P E S + AR+ALP +S + FPG FGS HY W G TPLTS Sbjct: 242 GQGVPAELS-----SAQSAADTARKALPGNEVSFIAFPGNAFGSPHHYITWMRGATPLTS 296 Query: 302 RMFTPILLEACRGRIVSTSTLPWYLKALELSRPLHFGDYGGLPLKIIWALLDLLAIAVLV 361 +M TP+L++ G + + + +PWYL ALELSRPLHFGDY GLPLKIIWA+LDL+ I VLV Sbjct: 297 KMNTPVLIDGRSGELTTIAKMPWYLTALELSRPLHFGDYAGLPLKIIWAVLDLITIVVLV 356 Query: 362 SGIYLWIARNYPGTLRPAD 380 SG+YLW+AR R A+ Sbjct: 357 SGLYLWLARRRATEARIAE 375 >gb|EGP44534.1| PepSY-associated TM helix family protein 3 [Achromobacter xylosoxidans AXX-A] Length = 390 Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 185/379 (48%), Positives = 242/379 (63%), Gaps = 14/379 (3%) Query: 6 MTTWYRVHKWTSLVSTVFLLLLCLTGLPLIFGDEIDAVFDPEVAISAVAAGTPDASLDRI 65 + TWY VHKWTSLV T+FLL++CLTGLPL+F EI+ D +S V A TP A+LD++ Sbjct: 7 IKTWYLVHKWTSLVCTIFLLIICLTGLPLVFHHEIEHWLDDGKPLSDVPASTPPANLDKL 66 Query: 66 IAAAHARYPGQHLRFMVWDKEEPRRLSLNMAASADATAAQGHVLIYDTRTATLLSETPAL 125 + A + YPG+ + ++ +D +EP+ + + MA GH + D RT +L + P Sbjct: 67 VDTAKSMYPGEVVDYLFFDPDEPQ-VYVGMAKKPGDGPVSGHAVRMDGRTGDVLLDGPPY 125 Query: 126 H----GFMHVMLQLHQNLFIGLAGDLLLGVAGLLFLAALVSGVVLYGPYMRKLDFGAVRF 181 FM +ML LH +LF L G+L LG GLLF A+VSGVVLYGP+M+KL+FG VR Sbjct: 126 SQDKFSFMGIMLALHVDLFADLPGELFLGFMGLLFCIAIVSGVVLYGPFMKKLEFGTVRA 185 Query: 182 ARGRRLRWLDLHNLIGVAVLAWMCAVGLTGFINTLSKPLFGLWSAQEMPRLLAQAAQAAQ 241 R RL+WLDLHNL+G+ L W VG TG IN LS PLF LW + E+ +L + + Sbjct: 186 GRSTRLKWLDLHNLLGIVTLVWAFVVGFTGVINELSTPLFRLWQSTELASIL----EPYK 241 Query: 242 AAKDPKEPQCSSTLSVDAIVAAARRALPDKRISSVVFPGARFGSAQHYTLWTVGNTPLTS 301 P E S A AR+ALP ++S + FPG FGS HY W G+TPLTS Sbjct: 242 GQGVPAELS-----SAQAAADTARKALPGNQVSFIAFPGNAFGSPHHYISWMRGDTPLTS 296 Query: 302 RMFTPILLEACRGRIVSTSTLPWYLKALELSRPLHFGDYGGLPLKIIWALLDLLAIAVLV 361 +M TP+L++ G + + + +PWYL ALELSRPLHFGDYGGLPLKIIWA+LDL+ I VLV Sbjct: 297 KMNTPVLIDGRSGELTTIAKMPWYLTALELSRPLHFGDYGGLPLKIIWAVLDLITIVVLV 356 Query: 362 SGIYLWIARNYPGTLRPAD 380 SG+YLW+AR R A+ Sbjct: 357 SGLYLWLARRRATEARIAE 375