BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0440.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07030976.1| molybdopterin dehydrogenase FAD-binding [Acid... 414 e-114 ref|ZP_07028492.1| molybdopterin dehydrogenase FAD-binding [Afip... 414 e-113 ref|YP_001887959.1| FAD-binding molybdopterin dehydrogenase [Bur... 413 e-113 ref|YP_004210196.1| molybdopterin dehydrogenase FAD-binding prot... 410 e-112 ref|YP_001861266.1| molybdopterin dehydrogenase FAD-binding [Bur... 404 e-110 >ref|ZP_07030976.1| molybdopterin dehydrogenase FAD-binding [Acidobacterium sp. MP5ACTX8] gb|EFI56593.1| molybdopterin dehydrogenase FAD-binding [Acidobacterium sp. MP5ACTX8] Length = 334 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 258/329 (78%), Gaps = 5/329 (1%) Query: 1 MHTFQMLRAQSPDEAVRLAAAAMEATPQ---PIRFLAGGTTLVDLMKLDVEQPQQVIDIN 57 M FQ++ A++ +AV+ A A AT Q +RF+AGGT LVD MKL+VE+P+Q++DIN Sbjct: 1 MELFQLVTAKTIPDAVK--AQAQSATAQNGADVRFIAGGTNLVDYMKLNVERPRQLVDIN 58 Query: 58 RLPLNQIEQTADGGLKIGALVRNSDLANHPLIVQRYPMLSQALLSGASAQLRNMATTGGN 117 LPL++IE+T++GGLKIGAL RN+D+A + ++Y +LSQALL+GAS QLRNMATT GN Sbjct: 59 GLPLDKIERTSEGGLKIGALARNADVAQDATVKEQYAVLSQALLAGASPQLRNMATTAGN 118 Query: 118 LLQRTRCVYFRDTATACNKRQPGSGCAAQEGFHRNLAILGTSEQCIASNPSDMNVALAAL 177 LLQ+TRCVY+RDTA+ACNKRQPGSGC+A G++R LAILGTSE CIA+NPSD N+AL AL Sbjct: 119 LLQKTRCVYYRDTASACNKRQPGSGCSAIGGYNRMLAILGTSEHCIATNPSDQNIALMAL 178 Query: 178 EAIIHVQGANGARIVPINEFHLLPGSTPQRETVLAPGELVTHVALRPPLANAGSTYLKLR 237 EA++H++G NG R VPI+EF+LLPGSTP+RETVL PG+LVTH+ L P+ A S YLKLR Sbjct: 179 EAVVHIEGKNGRRAVPISEFYLLPGSTPERETVLQPGDLVTHITLSKPVVGAKSGYLKLR 238 Query: 238 DRASYEFALASAAVQLSVDGGRISRARVALGGVGAKPWRSLEAEAVLQDAAPTVDVFARA 297 DRASYEFALASAA+ + DG RIS RVA+GGVG +PWR+LEAE VL A T F A Sbjct: 239 DRASYEFALASAAIVMKKDGDRISYVRVAMGGVGTRPWRALEAEKVLMGKAATEANFRAA 298 Query: 298 AAAAVRDARPLRDNVFKVDLIQRCLVQAL 326 A AA+ ARP N FKV+L +RCLV + Sbjct: 299 AEAALHGARPQSQNGFKVELAKRCLVHTM 327 >ref|ZP_07028492.1| molybdopterin dehydrogenase FAD-binding [Afipia sp. 1NLS2] gb|EFI50482.1| molybdopterin dehydrogenase FAD-binding [Afipia sp. 1NLS2] Length = 334 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/331 (64%), Positives = 252/331 (76%), Gaps = 1/331 (0%) Query: 1 MHTFQMLRAQSPDEAVRLAAAAMEATPQ-PIRFLAGGTTLVDLMKLDVEQPQQVIDINRL 59 MH FQ+ RA D A++ A+AA A IRFLAGGTTL+DLMKL+VE PQQVIDIN L Sbjct: 1 MHMFQLRRADDVDAAIKAASAAQTAQQGADIRFLAGGTTLIDLMKLNVETPQQVIDINHL 60 Query: 60 PLNQIEQTADGGLKIGALVRNSDLANHPLIVQRYPMLSQALLSGASAQLRNMATTGGNLL 119 PL++IE TADGGLKIGA VRN+DLA+ +V+ YP+LSQALLSGASAQLRNMATT GNLL Sbjct: 61 PLDKIEPTADGGLKIGATVRNADLAHDERVVRDYPVLSQALLSGASAQLRNMATTAGNLL 120 Query: 120 QRTRCVYFRDTATACNKRQPGSGCAAQEGFHRNLAILGTSEQCIASNPSDMNVALAALEA 179 QRTRCVYFRD ACNKR PGSGCAA GF+R LAILGTS+QCIASNPSDMNVAL AL+A Sbjct: 121 QRTRCVYFRDEHMACNKRNPGSGCAAINGFNRTLAILGTSDQCIASNPSDMNVALMALDA 180 Query: 180 IIHVQGANGARIVPINEFHLLPGSTPQRETVLAPGELVTHVALRPPLANAGSTYLKLRDR 239 IH++G R VPI EF LLPG+TP +ETV+ PG+L+THV L P + S YLKLRDR Sbjct: 181 TIHIRGPQSERDVPIAEFFLLPGNTPNKETVMQPGDLITHVTLPAPPKGSRSLYLKLRDR 240 Query: 240 ASYEFALASAAVQLSVDGGRISRARVALGGVGAKPWRSLEAEAVLQDAAPTVDVFARAAA 299 SYEFALASAAV ++V G+I A+ A+GGVG +PWR+ +AE L AP + F AA Sbjct: 241 VSYEFALASAAVVMTVTNGKIETAQFAMGGVGTRPWRNADAEKTLIGKAPDKETFRAAAE 300 Query: 300 AAVRDARPLRDNVFKVDLIQRCLVQALRIAA 330 A ++DA+P N FKV+L +RCLV L AA Sbjct: 301 AFLKDAKPQSQNGFKVELAKRCLVHTLDAAA 331 >ref|YP_001887959.1| FAD-binding molybdopterin dehydrogenase [Burkholderia phytofirmans PsJN] gb|ACD18589.1| molybdopterin dehydrogenase FAD-binding [Burkholderia phytofirmans PsJN] Length = 335 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/334 (65%), Positives = 258/334 (77%), Gaps = 5/334 (1%) Query: 1 MHTFQMLRAQSPDEAVRLAAAAMEATPQP---IRFLAGGTTLVDLMKLDVEQPQQVIDIN 57 M FQ+ RA +A+ A A AT Q +RFLAGGTTL+DLMKL+VEQP QVIDI+ Sbjct: 1 MEIFQLSRANGVRDAI--TAGATSATAQQGAQVRFLAGGTTLLDLMKLNVEQPTQVIDIS 58 Query: 58 RLPLNQIEQTADGGLKIGALVRNSDLANHPLIVQRYPMLSQALLSGASAQLRNMATTGGN 117 RLPL++IE DGG+KIGA RN+DLA HPLI Y +LSQALL+GASAQLRNMATTGGN Sbjct: 59 RLPLDRIEALPDGGVKIGATARNADLALHPLIRAPYAVLSQALLAGASAQLRNMATTGGN 118 Query: 118 LLQRTRCVYFRDTATACNKRQPGSGCAAQEGFHRNLAILGTSEQCIASNPSDMNVALAAL 177 LLQRTRCVYFRDTA CNKR+PGSGC A +GF+R LAILG S+ CIA+NPSDMNVAL AL Sbjct: 119 LLQRTRCVYFRDTAMPCNKREPGSGCPAIQGFNRTLAILGASDACIATNPSDMNVALTAL 178 Query: 178 EAIIHVQGANGARIVPINEFHLLPGSTPQRETVLAPGELVTHVALRPPLANAGSTYLKLR 237 +A IHV+G GAR + I++F +LPG+TPQRE VL G+L+THV L P A A S YLKLR Sbjct: 179 DATIHVEGTGGARSIAIDDFFVLPGTTPQRENVLDAGDLITHVTLPPLPAGARSVYLKLR 238 Query: 238 DRASYEFALASAAVQLSVDGGRISRARVALGGVGAKPWRSLEAEAVLQDAAPTVDVFARA 297 DRASYEFALASAAV +++DGGRI RVALGGVG +PW +LEAEAVL+ AAP F +A Sbjct: 239 DRASYEFALASAAVVVTLDGGRIGHVRVALGGVGTRPWHALEAEAVLRGAAPDAATFRKA 298 Query: 298 AAAAVRDARPLRDNVFKVDLIQRCLVQALRIAAA 331 A AA+ +A+P N FKV+L +RC+V AL A A Sbjct: 299 ADAALANAKPQSQNGFKVELARRCIVHALTQATA 332 >ref|YP_004210196.1| molybdopterin dehydrogenase FAD-binding protein [Acidobacterium sp. MP5ACTX9] gb|ADW70878.1| molybdopterin dehydrogenase FAD-binding protein [Acidobacterium sp. MP5ACTX9] Length = 327 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 253/331 (76%), Gaps = 6/331 (1%) Query: 1 MHTFQMLRAQSPDEAVRLAAAAMEATPQPIRFLAGGTTLVDLMKLDVEQPQQVIDINRLP 60 M F+ RA +AV+L A Q RF+AGGTTL+DLMKLDVE+P +V+DINRLP Sbjct: 1 MEAFKFTRANDVPQAVQLGQA------QGTRFVAGGTTLLDLMKLDVERPTRVVDINRLP 54 Query: 61 LNQIEQTADGGLKIGALVRNSDLANHPLIVQRYPMLSQALLSGASAQLRNMATTGGNLLQ 120 L+++E DG L++GALVRNSDLA+HPL+V+ P+LSQALL+GASAQLRNMATTGGNLLQ Sbjct: 55 LDKVETLPDGRLRVGALVRNSDLAHHPLVVEHCPVLSQALLAGASAQLRNMATTGGNLLQ 114 Query: 121 RTRCVYFRDTATACNKRQPGSGCAAQEGFHRNLAILGTSEQCIASNPSDMNVALAALEAI 180 RTRC YFR+ A CNKR+PGSGC+A EG +R LAILGTS+ CIA+NPSDMNVAL ALEA+ Sbjct: 115 RTRCAYFRNDAMPCNKREPGSGCSAIEGDNRTLAILGTSKHCIATNPSDMNVALTALEAV 174 Query: 181 IHVQGANGARIVPINEFHLLPGSTPQRETVLAPGELVTHVALRPPLANAGSTYLKLRDRA 240 IH+QG G R +PI +F L+PG+TP+RETVL PG+L+TH+ L P A YLKLRDRA Sbjct: 175 IHIQGPKGERDIPIADFFLVPGTTPERETVLTPGDLITHITLPAPRKGAKQVYLKLRDRA 234 Query: 241 SYEFALASAAVQLSVDGGRISRARVALGGVGAKPWRSLEAEAVLQDAAPTVDVFARAAAA 300 SYEFALASAA+ + GGRI+ ARVA+GGVG KPWRSLEAE L + VF RAA A Sbjct: 235 SYEFALASAAIVIESTGGRITFARVAMGGVGTKPWRSLEAEKALHGQPASEAVFHRAAEA 294 Query: 301 AVRDARPLRDNVFKVDLIQRCLVQALRIAAA 331 A+ A+P N FK++L +RC+ AL +A A Sbjct: 295 ALHAAQPQSQNGFKIELARRCVAHALTLATA 325 >ref|YP_001861266.1| molybdopterin dehydrogenase FAD-binding [Burkholderia phymatum STM815] gb|ACC74220.1| molybdopterin dehydrogenase FAD-binding [Burkholderia phymatum STM815] Length = 333 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/327 (65%), Positives = 256/327 (78%), Gaps = 2/327 (0%) Query: 1 MHTFQMLRAQSPDEAVRLAAAAMEATP-QPIRFLAGGTTLVDLMKLDVEQPQQVIDINRL 59 M FQ+ RA +AV AA+ A +RFLAGGTTL+DLMKLDVE P +V+DI+RL Sbjct: 1 MELFQLSRATDVRDAVMAGAASRTAQQGAQVRFLAGGTTLLDLMKLDVEHPARVVDISRL 60 Query: 60 PLNQIEQTADGGLKIGALVRNSDLANHPLIVQRYPMLSQALLSGASAQLRNMATTGGNLL 119 PL+++E T +GG++IGA VRN+DLA HPLI + Y +LSQALL+GASAQLRNMATTGGNLL Sbjct: 61 PLDRVETTDEGGVRIGATVRNADLALHPLIHEPYAVLSQALLAGASAQLRNMATTGGNLL 120 Query: 120 QRTRCVYFRDTATACNKRQPGSGCAAQEGFHRNLAILGTSEQCIASNPSDMNVALAALEA 179 QRTRCVYFRDTA CNKR PGSGCAA+ GF+R +AILGTS+ CIA+NPSDMNVALAAL A Sbjct: 121 QRTRCVYFRDTAMPCNKRMPGSGCAARTGFNRTMAILGTSDACIATNPSDMNVALAALGA 180 Query: 180 IIHVQGANGARIVPINEFHLLPGSTPQRETVLAPGELVTHVALRPPLANAGSTYLKLRDR 239 I + G G R V I++FHLLPG TP+RETVL PG+LVTHV L PP+ + S YLKLRDR Sbjct: 181 TIQILGVKGTRTVSIDDFHLLPGDTPERETVLEPGDLVTHVTL-PPIPGSRSLYLKLRDR 239 Query: 240 ASYEFALASAAVQLSVDGGRISRARVALGGVGAKPWRSLEAEAVLQDAAPTVDVFARAAA 299 ASYEFALASAAV +++ GRI+RA+VALGGVG KPW + EAEA L A P FARAA Sbjct: 240 ASYEFALASAAVVVNISEGRIARAQVALGGVGTKPWHAREAEAELAGAVPDAASFARAAD 299 Query: 300 AAVRDARPLRDNVFKVDLIQRCLVQAL 326 AA+ DA+P N FK++L +RCL+ AL Sbjct: 300 AALADAKPQSQNGFKIELARRCLIHAL 326