BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0439.p         (280 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_07028491.1| (2Fe-2S)-binding domain protein [Afipia sp. 1...   235   5e-60
ref|YP_002288614.1| oxidoreductase [Oligotropha carboxidovorans ...   235   7e-60
ref|YP_001861265.1| 2Fe-2S iron-sulfur cluster binding domain-co...   229   3e-58
ref|YP_004210197.1| (2Fe-2S)-binding domain-containing protein [...   229   4e-58
ref|YP_001632550.1| putative xanthine dehydrogenase [Bordetella ...   224   2e-56

>ref|ZP_07028491.1| (2Fe-2S)-binding domain protein [Afipia sp. 1NLS2]
 gb|EFI50481.1| (2Fe-2S)-binding domain protein [Afipia sp. 1NLS2]
          Length = 206

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 141/203 (69%), Gaps = 8/203 (3%)

Query: 81  SPNGVPHLTRRSFLMWAGSSGALGAL----PATAPAAPVAASAPGGTVDDSIVTVRLTVN 136
           S +G P   RR+ L   G++G   A     P+ A   P   +   G      V  +LT+N
Sbjct: 7   SKSGKPGPDRRTVLQTIGAAGIATATNWPTPSKADMTPTKTTVSAGYA----VETKLTIN 62

Query: 137 DITQEATVDVRTSLLDYLRENLQLTGTKKGCDHGQCGACTVHVNGRRVNSCLSLVAMHEG 196
                AT+D RT+LLD+LRE++ LTGTKKGCDHGQCGACTVHV+GRRVNSCL+      G
Sbjct: 63  GKPYSATIDPRTTLLDFLREHVHLTGTKKGCDHGQCGACTVHVDGRRVNSCLTFAGALTG 122

Query: 197 DSVTTIEGLGTPDRLHPLQAAFVAHDGLQCGYCTAGQIMSAAALLTEPCGRTDADVKEAM 256
             VTTIEGLG P  LHP+QAAFV HDG QCGYCT+GQIMSA AL+ EPCG +DA+V+E M
Sbjct: 123 REVTTIEGLGEPGNLHPMQAAFVEHDGYQCGYCTSGQIMSAVALMKEPCGPSDAEVRELM 182

Query: 257 SGNICRCGAYSNIVAAIRQVRDA 279
           SGNICRCGAY NIVAAI+QVR  
Sbjct: 183 SGNICRCGAYQNIVAAIQQVRQG 205


>ref|YP_002288614.1| oxidoreductase [Oligotropha carboxidovorans OM5]
 ref|YP_004633319.1| xanthine dehydrogenase iron-sulfur-binding subunit [Oligotropha
           carboxidovorans OM5]
 gb|ACI92749.1| oxidoreductase [Oligotropha carboxidovorans OM5]
 gb|AEI03501.1| putative xanthine dehydrogenase iron-sulfur-binding subunit
           [Oligotropha carboxidovorans OM4]
 gb|AEI07078.1| putative xanthine dehydrogenase iron-sulfur-binding subunit
           [Oligotropha carboxidovorans OM5]
          Length = 209

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 90  RRSFLMWAGSSGALGALPATAPAAPVAA---SAPGGTVDDSIVTVRLTVNDITQEATVDV 146
           RR+ L   G++G          A    A   + P   V +  V V + VN       +D 
Sbjct: 16  RRTILQTLGAAGVAATWQGNVRAENARAEAATPPSLPVPNDYVEVEMRVNKQPVSMRIDP 75

Query: 147 RTSLLDYLRENLQLTGTKKGCDHGQCGACTVHVNGRRVNSCLSLVAMHEGDSVTTIEGLG 206
           RT+LLD+LRE++ LTGTKKGCDHGQCGACTVHVNGRRVNSCLS  A H+G+ +TTIEGLG
Sbjct: 76  RTTLLDFLREHMHLTGTKKGCDHGQCGACTVHVNGRRVNSCLSFAATHQGEEITTIEGLG 135

Query: 207 TPDRLHPLQAAFVAHDGLQCGYCTAGQIMSAAALLTEPCGRTDADVKEAMSGNICRCGAY 266
            P+ LH +QAAFV HDG QCGYCT+GQIMSA ALL EPCG T+ADV+E MSGNICRCGAY
Sbjct: 136 EPEHLHEMQAAFVEHDGYQCGYCTSGQIMSAVALLHEPCGPTNADVRELMSGNICRCGAY 195

Query: 267 SNIVAAIRQVRDA 279
           +NIVAAI+QVR  
Sbjct: 196 NNIVAAIQQVRQG 208


>ref|YP_001861265.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein
           [Burkholderia phymatum STM815]
 gb|ACC74219.1| (2Fe-2S)-binding domain protein [Burkholderia phymatum STM815]
          Length = 183

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/174 (67%), Positives = 132/174 (75%), Gaps = 8/174 (4%)

Query: 107 PATAP---AAPVAASAPGGTVDDSIVTVRLTVNDITQEATVDVRTSLLDYLRENLQLTGT 163
           P  AP    AP A + PG T+      V L VN  +   ++D RT+LLD LRE+L LTGT
Sbjct: 12  PHEAPERSGAPHAPAVPGVTI-----AVELNVNGTSYALSLDPRTTLLDALREHLHLTGT 66

Query: 164 KKGCDHGQCGACTVHVNGRRVNSCLSLVAMHEGDSVTTIEGLGTPDRLHPLQAAFVAHDG 223
           KKGCDHGQCGACTVHVNGRRVN+CLSL A HEGD++TTIEGLG PD LHP+QAAFV  DG
Sbjct: 67  KKGCDHGQCGACTVHVNGRRVNACLSLAATHEGDTITTIEGLGEPDALHPMQAAFVECDG 126

Query: 224 LQCGYCTAGQIMSAAALLTEPCGRTDADVKEAMSGNICRCGAYSNIVAAIRQVR 277
            QCGYCTAGQIMSA ALL E  G  DADV+EAMSGN+CRCGAY NIV AI+ VR
Sbjct: 127 YQCGYCTAGQIMSAVALLGEAVGPDDADVREAMSGNLCRCGAYQNIVTAIQSVR 180


>ref|YP_004210197.1| (2Fe-2S)-binding domain-containing protein [Acidobacterium sp.
           MP5ACTX9]
 gb|ADW70879.1| (2Fe-2S)-binding domain-containing protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 214

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 122/149 (81%)

Query: 129 VTVRLTVNDITQEATVDVRTSLLDYLRENLQLTGTKKGCDHGQCGACTVHVNGRRVNSCL 188
           + V L++N  +    +D RT+LLD LRE + LTGTKKGCDHGQCGACTVHV+GRR+NSCL
Sbjct: 63  IPVALSINGKSYALNLDPRTTLLDALRETVSLTGTKKGCDHGQCGACTVHVDGRRINSCL 122

Query: 189 SLVAMHEGDSVTTIEGLGTPDRLHPLQAAFVAHDGLQCGYCTAGQIMSAAALLTEPCGRT 248
           +L  MH+G  +TTIEGLG PD LH +QAAFV HDG QCGYCT+GQIMSA ALL EPCG  
Sbjct: 123 TLAVMHDGQQITTIEGLGQPDALHAMQAAFVEHDGYQCGYCTSGQIMSAVALLKEPCGPA 182

Query: 249 DADVKEAMSGNICRCGAYSNIVAAIRQVR 277
           DADVKEAM+GNICRCGAY NIVAAI+ VR
Sbjct: 183 DADVKEAMAGNICRCGAYPNIVAAIQHVR 211


>ref|YP_001632550.1| putative xanthine dehydrogenase [Bordetella petrii DSM 12804]
 emb|CAP44282.1| putative xanthine dehydrogenase [Bordetella petrii]
          Length = 172

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 126/172 (73%), Gaps = 6/172 (3%)

Query: 106 LPATAPAAPVAASAPGGTVDDSIVTVRLTVNDITQEATVDVRTSLLDYLRENLQLTGTKK 165
            P     AP AA  P G      V V L VN  +   T+D R +LLD LRE L LTGTKK
Sbjct: 4   FPGGTSCAPCAAGGPAG------VPVTLRVNGASHALTLDPRATLLDTLRETLHLTGTKK 57

Query: 166 GCDHGQCGACTVHVNGRRVNSCLSLVAMHEGDSVTTIEGLGTPDRLHPLQAAFVAHDGLQ 225
           GCDHGQCGACTVH++GRRVN+CL L A   G  +TTIEGLG    LHPLQAAFVAHDG Q
Sbjct: 58  GCDHGQCGACTVHMDGRRVNACLVLAAAASGRDITTIEGLGGLPSLHPLQAAFVAHDGYQ 117

Query: 226 CGYCTAGQIMSAAALLTEPCGRTDADVKEAMSGNICRCGAYSNIVAAIRQVR 277
           CGYCTAGQIMSAAALL EPCG +D DV+E MSGNICRCGAY+NIVAAI+ VR
Sbjct: 118 CGYCTAGQIMSAAALLHEPCGDSDDDVRELMSGNICRCGAYANIVAAIQDVR 169