BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0438.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153636.1| LysR family transcriptional regulator [Vario... 166 1e-39 ref|YP_002945813.1| LysR family transcriptional regulator [Vario... 161 3e-38 ref|YP_968589.1| LysR family transcriptional regulator [Acidovor... 157 7e-37 ref|YP_004125648.1| lysr substrate-binding protein [Alicycliphil... 154 3e-36 ref|YP_004232745.1| LysR family transcriptional regulator [Acido... 154 4e-36 >ref|YP_004153636.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35525.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 306 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 106/151 (70%), Gaps = 6/151 (3%) Query: 1 MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60 +GKVKS WM KPG++ + +R+H+LA++ +L QG+ SGTG YD W K Q V PS Sbjct: 159 IGKVKSAWMCKPGVVQTTGT----VRLHDLARHRMLVQGNNSGTGRAYDAWMKDQGVQPS 214 Query: 61 NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120 N I S+LVAL GLTVSG+GVSYLP CL LV G L V+E TP LP + YVA+++GE Sbjct: 215 NVIVVSNLVALTGLTVSGLGVSYLPRECLAPLVAAGMLSVIEVTPPLPVVRYVAMHKGEH 274 Query: 121 KSNFISSILMLAQECCEFSDLF--QIEDEAA 149 +S SSI+MLAQECC+F+ +F Q EDE A Sbjct: 275 RSALTSSIVMLAQECCDFTRMFQAQAEDEEA 305 >ref|YP_002945813.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS20547.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 306 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/147 (51%), Positives = 104/147 (70%), Gaps = 4/147 (2%) Query: 1 MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60 +GKV+S WM KPG++ + +R+HELA++ +L QG SGTG YD W K Q V P+ Sbjct: 159 IGKVQSAWMCKPGVV----AATGTVRLHELARHRMLVQGKNSGTGRAYDAWMKDQGVQPA 214 Query: 61 NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120 ++I S+LVAL GLTVSG+GVSYLP CL LV G L V++ PALP + YVA+++GE Sbjct: 215 DTIVVSNLVALTGLTVSGLGVSYLPRRCLDPLVSAGMLAVIDVQPALPVVRYVAMHKGEH 274 Query: 121 KSNFISSILMLAQECCEFSDLFQIEDE 147 +S SSI+MLAQECC+F+ +FQ + + Sbjct: 275 RSALTSSIVMLAQECCDFTRMFQAQQD 301 >ref|YP_968589.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM30815.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 339 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 74/163 (45%), Positives = 113/163 (69%), Gaps = 3/163 (1%) Query: 1 MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60 +G+V+S WM +PGL+ + G R +R+H+LA + +L QG+ SGTG IYD W + + V P+ Sbjct: 170 VGQVESAWMCRPGLVQPPAPG-RPVRLHDLAAHRLLVQGNASGTGRIYDGWMRERGVEPA 228 Query: 61 NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120 +++ S+L+AL GLT+SG+GVSYLP CL LV G L +E P LP +PYVA+ RGE+ Sbjct: 229 DTLVVSNLIALAGLTISGLGVSYLPRHCLAPLVAAGMLAEIEVQPPLPPVPYVAMVRGEQ 288 Query: 121 KSNFISSILMLAQECCEFSDLFQ--IEDEAAGIGHVHAGASPF 161 +S ++S++MLAQ CC+F+ +FQ ++ +A G + + PF Sbjct: 289 RSALVASVIMLAQSCCDFTRVFQAGVDVASAEPGRMESRPGPF 331 >ref|YP_004125648.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gb|ADU98760.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 300 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 103/143 (72%), Gaps = 4/143 (2%) Query: 1 MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60 +G V++ WM KP L G ++ R+H+L+ +T LTQGDKSGTG+IY+ W + + P+ Sbjct: 160 LGSVENAWMCKPHLF----DGFKIRRLHDLSSHTFLTQGDKSGTGVIYNEWLDAVNMRPT 215 Query: 61 NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120 N I C+SL+A+IG+TVSG+G SYLP L L++ L+V++ TP LP++ YVA Y+ E+ Sbjct: 216 NIIVCNSLLAIIGMTVSGLGFSYLPRESLEPLIQADYLQVLKVTPPLPKMNYVAAYKSEQ 275 Query: 121 KSNFISSILMLAQECCEFSDLFQ 143 +S ISSI++LAQECC+FS + Q Sbjct: 276 RSTLISSIVLLAQECCDFSRVLQ 298 >ref|YP_004232745.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44178.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 309 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 105/144 (72%), Gaps = 1/144 (0%) Query: 1 MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60 +G+V+S WM +PGL+ + G R +R+H+LA + +L QG+ SGTG IYD W + + V P+ Sbjct: 160 VGQVESAWMCRPGLVQPPAPG-RPVRLHDLAAHRLLVQGNASGTGRIYDGWMRERGVEPA 218 Query: 61 NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120 +++ S+L+AL GLT+SG+GVSYLP CL LV G L ++ P LP +PYVA+ RGE+ Sbjct: 219 DTLVVSNLIALAGLTISGLGVSYLPRHCLAPLVAAGMLAEIDVQPPLPPVPYVAMVRGEQ 278 Query: 121 KSNFISSILMLAQECCEFSDLFQI 144 +S ++S++MLAQ CC+F+ +FQ+ Sbjct: 279 RSALVASVIMLAQSCCDFARVFQV 302