BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0422.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773476.1| transcription regulator protein [Herbaspiril... 412 e-113 ref|YP_001619602.1| LysR family transcriptional regulator [Soran... 402 e-110 ref|YP_004682446.1| LysR family transcriptional regulator [Cupri... 388 e-106 ref|YP_841808.1| LysR family transcriptional regulator [Ralstoni... 384 e-105 ref|YP_004663080.1| LysR family transcriptional regulator [Myxoc... 384 e-104 >ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61568.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/299 (70%), Positives = 251/299 (83%) Query: 52 IQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTEDGERCY 111 +QTFVRIV+AGSLSAAA+QL TTQPTISRRLQ LERSLGVRLLQRSTHAMK+TEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 112 ERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAITVEWL 171 ERA +LLAGW+ F+ ++RGA A G+LRVVVP+AFGQ+QLI PLA+FMR+HP ITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 172 LYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHPRDLAA 231 L+DR ADFI+ GIDCAIQVGEV+DP+VVAI LAEVPRM +AP++LA P P HP DLA Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 232 MPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLGSAWLLA 291 +PW+AIP FYRR+VTL + TGE +V+F+P+L +DSLYAL N AV G+G+ +GS+W+L Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 292 EHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAMPAAVGSAARWPA 350 E + GRLV LLP W+ APLPV ++YPYARF PARLR+FIDTM+EAMPA V A W A Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGA 299 >ref|YP_001619602.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] emb|CAN99123.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 350 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 207/344 (60%), Positives = 263/344 (76%), Gaps = 8/344 (2%) Query: 5 VEFARHCCAAVVAWRAELLYAVRMSKATISAPAALPPSSSAADRIELIQTFVRIVQAGSL 64 E+ H +AVVAW A LY RM++ PA PPS S+ D I L+QTFVRIV+AGSL Sbjct: 12 TEYGNHRSSAVVAWSARWLYRRRMTR-----PA--PPSPSSLDDIGLLQTFVRIVEAGSL 64 Query: 65 SAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTEDGERCYERALDLLAGWESF 124 SAAA+ LGTTQPT+SRRLQ LERSLG+ LLQRSTH MKLTEDGERC+ERA LLA E+F Sbjct: 65 SAAATLLGTTQPTVSRRLQALERSLGLPLLQRSTHTMKLTEDGERCFERAKALLASLEAF 124 Query: 125 QFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAITVEWLLYDRVADFIAHGI 184 D+RG + G+LRVVVP+AFGQ QL+ PLA+++RR+P ++VEWLL+D +FIA GI Sbjct: 125 ASDMRGDRDQPDGTLRVVVPHAFGQHQLVKPLADYLRRYPRVSVEWLLHDGQPNFIADGI 184 Query: 185 DCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHPRDLAAMPWLAIPQFYRRD 244 DCAI VG V+DPAVVAIRL EVPR+VA AP++L + P HP DLA MPWLA+ +YR Sbjct: 185 DCAILVGAVADPAVVAIRLTEVPRIVAAAPSVLGRAARPAHPSDLADMPWLALRTYYRDT 244 Query: 245 VTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLGSAWLLAEHMEQGRLVPLLP 304 +TL + + GE E+A +PR+S+DSLYAL +AA+ G+G+ + S+WLL + + Q RL+ L P Sbjct: 245 ITLTHASGGERVELAIRPRMSTDSLYALRSAALMGLGVCVASSWLLTDDLAQRRLLHLAP 304 Query: 305 GWEAAPLPVSIIYPYARFYPARLRYFIDTMREAMPAAV-GSAAR 347 W+A PLPV ++YP+ARFYPARLR FI+ MRE++PA V G+AAR Sbjct: 305 SWQADPLPVHLVYPHARFYPARLRRFIEVMRESVPAVVDGAAAR 348 >ref|YP_004682446.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI81214.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 340 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/307 (61%), Positives = 236/307 (76%), Gaps = 2/307 (0%) Query: 42 SSSAADRIELIQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAM 101 +++ADRIEL+QTFVRIV+AGSLS AA+QL TTQPT+SRRLQ LER LGVRLLQRSTHAM Sbjct: 21 GATSADRIELMQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERLLGVRLLQRSTHAM 80 Query: 102 KLTEDGERCYERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMR 161 KLTEDGERCYERA L+A W F+ DVRG G G+LRVVVP+AFGQ L+ PLA F++ Sbjct: 81 KLTEDGERCYERAKGLVADWTMFEADVRGVGHAPAGTLRVVVPHAFGQELLVGPLAGFLQ 140 Query: 162 RHPAITVEWLLYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYP 221 ++P ++VEWLL+DR DFIA IDCAI VGEV +P VVA+RLA+VPR V AP+L P Sbjct: 141 QYPEVSVEWLLHDRTPDFIAEAIDCAIHVGEVHEPGVVAVRLADVPRAVIAAPSLFEGKP 200 Query: 222 TPTHPRDLAAMPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVG 281 P P DL +PWLA+ FYR +V L+NT T +AFQPR+S+DSLYAL +A G+G Sbjct: 201 LPRRPEDLEGLPWLALRTFYRNEVVLQNTQTQARQGIAFQPRMSTDSLYALHSATRLGLG 260 Query: 282 LMLGSAWLLAEHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAM--P 339 + +GSAW+ A+ + GRL+ LLP W+A PLP+ ++YPYARFYPA+LR F+D MR+A+ P Sbjct: 261 VAVGSAWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLRSFVDAMRQAIPTP 320 Query: 340 AAVGSAA 346 VGSA Sbjct: 321 GMVGSAG 327 >ref|YP_841808.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ97078.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 342 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/305 (61%), Positives = 235/305 (77%), Gaps = 2/305 (0%) Query: 42 SSSAADRIELIQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAM 101 +++ADRIEL+QTFVRIV+AGSLS AA+QL TTQPT+SRRLQ LER LGVRLLQRSTHAM Sbjct: 23 GATSADRIELLQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERLLGVRLLQRSTHAM 82 Query: 102 KLTEDGERCYERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMR 161 KLTEDGERCYERA +L+A W F+ DVRG G G+LRVVVP+AFGQ L+ PLA +++ Sbjct: 83 KLTEDGERCYERAKELVADWTMFEADVRGVGHAPAGTLRVVVPHAFGQELLVGPLAGYLQ 142 Query: 162 RHPAITVEWLLYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYP 221 + P ++VEWLL+DR DFIA IDCAI VGEV +P VVA+RLA+VPR V AP+L P Sbjct: 143 QCPEVSVEWLLHDRTPDFIAEAIDCAIHVGEVHEPGVVAVRLADVPRAVIAAPSLFEGKP 202 Query: 222 TPTHPRDLAAMPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVG 281 P P DL +PWLA+ FYR +V L+NT T +AFQPR+S+DSLYAL +A G+G Sbjct: 203 LPRRPEDLEDLPWLALRTFYRNEVVLQNTQTLARQGIAFQPRMSTDSLYALHSATRLGLG 262 Query: 282 LMLGSAWLLAEHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAM--P 339 + +GSAW+ A+ + GRL+ LLP W+A PLP+ ++YPYARFYPA+LR F+D MR+A+ P Sbjct: 263 VAVGSAWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLRLFVDAMRQAIPTP 322 Query: 340 AAVGS 344 VGS Sbjct: 323 GMVGS 327 >ref|YP_004663080.1| LysR family transcriptional regulator [Myxococcus fulvus HW-1] gb|AEI62002.1| LysR family transcriptional regulator [Myxococcus fulvus HW-1] Length = 298 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/296 (62%), Positives = 234/296 (79%) Query: 52 IQTFVRIVQAGSLSAAASQLGTTQPTISRRLQLLERSLGVRLLQRSTHAMKLTEDGERCY 111 +QTF+RIV AGSLS+AA+QLGTTQPT+SRRLQ LERSLG+RLLQRSTHAMKLTEDG RCY Sbjct: 1 MQTFIRIVDAGSLSSAAAQLGTTQPTVSRRLQALERSLGLRLLQRSTHAMKLTEDGARCY 60 Query: 112 ERALDLLAGWESFQFDVRGAGVEAGGSLRVVVPNAFGQRQLIAPLAEFMRRHPAITVEWL 171 RA +LLA WE + D+RGA E G+LRVVVP+AFGQ+ L+ PL E++ RH ++VEWL Sbjct: 61 GRAKELLASWELLEADLRGASNEPEGTLRVVVPHAFGQQLLVEPLTEYLNRHARVSVEWL 120 Query: 172 LYDRVADFIAHGIDCAIQVGEVSDPAVVAIRLAEVPRMVAIAPALLAQYPTPTHPRDLAA 231 L+DR DFI GIDCAI VGEV DP+VVAIR+AEVPR+V AP++L PTHP LA Sbjct: 121 LHDRAVDFITDGIDCAIHVGEVHDPSVVAIRVAEVPRIVVAAPSVLGGSSPPTHPDALAR 180 Query: 232 MPWLAIPQFYRRDVTLKNTATGEVAEVAFQPRLSSDSLYALTNAAVEGVGLMLGSAWLLA 291 +PWL++ FYR +++L + TGEV + FQPRLS+DSLYA+ +AA++G+G+ + SAWLL Sbjct: 181 LPWLSLRTFYRNELSLTHVDTGEVQPITFQPRLSTDSLYAIRSAALKGLGVCVASAWLLQ 240 Query: 292 EHMEQGRLVPLLPGWEAAPLPVSIIYPYARFYPARLRYFIDTMREAMPAAVGSAAR 347 E + QGRLV L+P W AA LP+ ++YP+ARF+PARLR F++ MR +PAA+ A R Sbjct: 241 EDLAQGRLVHLVPQWRAASLPMYLLYPHARFHPARLRKFVELMRATIPAALAVATR 296