BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0420.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773475.1| permease [Herbaspirillum seropedicae SmR1] >...   162   2e-38
ref|YP_370945.1| major facilitator transporter [Burkholderia sp....   146   1e-33
ref|YP_625238.1| major facilitator transporter [Burkholderia cen...   146   1e-33
ref|YP_001778420.1| major facilitator transporter [Burkholderia ...   145   3e-33
ref|YP_002235266.1| major facilitator superfamily protein [Burkh...   144   5e-33

>ref|YP_003773475.1| permease [Herbaspirillum seropedicae SmR1]
 gb|ADJ61567.1| permeases of the major facilitator superfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 412

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 104/119 (87%)

Query: 1   VTRLGIGLAILSFVAMASGPAFSASGQLWLLALAAIGFDLGVQATLVAHQTIVYSIEPGA 60
           VTRLG+GLAI+SF AMA  P FS  GQL LLA+AA+GFDLGVQATLVAHQTIVYSIEPGA
Sbjct: 294 VTRLGVGLAIVSFAAMALSPWFSTQGQLVLLAVAAVGFDLGVQATLVAHQTIVYSIEPGA 353

Query: 61  RSRLNAVLFVGMFVGMAAGAALGSLLLAQWGWIGVVGLATVASLSALLVRLLPGKNRDR 119
           RSRLNA+LFVGMF+GMAAGAALGSL+LAQWGWI VV LAT+A+  AL+VRL PG  R R
Sbjct: 354 RSRLNAILFVGMFIGMAAGAALGSLVLAQWGWIAVVALATLAAGLALVVRLWPGAARAR 412


>ref|YP_370945.1| major facilitator transporter [Burkholderia sp. 383]
 gb|ABB10301.1| Major facilitator superfamily (MFS_1) transporter [Burkholderia sp.
           383]
          Length = 410

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 90/111 (81%)

Query: 1   VTRLGIGLAILSFVAMASGPAFSASGQLWLLALAAIGFDLGVQATLVAHQTIVYSIEPGA 60
           VTR+GIG+A +SF +MA+ P  S   QL LLA+A IGFDLGVQATL+AHQ IVY I+P +
Sbjct: 297 VTRIGIGIATVSFASMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIAHQAIVYRIDPAS 356

Query: 61  RSRLNAVLFVGMFVGMAAGAALGSLLLAQWGWIGVVGLATVASLSALLVRL 111
           RSRLNAVLFVGMF+GMAAGAA+GSLLLAQ GW  V  LA V SL+AL VR+
Sbjct: 357 RSRLNAVLFVGMFIGMAAGAAIGSLLLAQLGWNAVTALAVVTSLAALAVRI 407


>ref|YP_625238.1| major facilitator transporter [Burkholderia cenocepacia AU 1054]
 ref|YP_839095.1| major facilitator transporter [Burkholderia cenocepacia HI2424]
 gb|ABF80265.1| major facilitator superfamily MFS_1 [Burkholderia cenocepacia AU
           1054]
 gb|ABK12202.1| major facilitator superfamily MFS_1 [Burkholderia cenocepacia
           HI2424]
          Length = 412

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 90/111 (81%)

Query: 1   VTRLGIGLAILSFVAMASGPAFSASGQLWLLALAAIGFDLGVQATLVAHQTIVYSIEPGA 60
           VTR+GIG+A LSF +MA+ P  S   QL LLA+A IGFDLGVQATL+AHQ+IVY I+P +
Sbjct: 299 VTRIGIGIATLSFASMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIAHQSIVYRIDPAS 358

Query: 61  RSRLNAVLFVGMFVGMAAGAALGSLLLAQWGWIGVVGLATVASLSALLVRL 111
           RSRLNAVLFVGMF+GMAAGAA+GSLLLAQ GW  V  LA   SL+AL VR+
Sbjct: 359 RSRLNAVLFVGMFIGMAAGAAIGSLLLAQLGWNAVTALAVATSLAALAVRV 409


>ref|YP_001778420.1| major facilitator transporter [Burkholderia cenocepacia MC0-3]
 gb|ACA93930.1| major facilitator superfamily MFS_1 [Burkholderia cenocepacia
           MC0-3]
          Length = 412

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 89/111 (80%)

Query: 1   VTRLGIGLAILSFVAMASGPAFSASGQLWLLALAAIGFDLGVQATLVAHQTIVYSIEPGA 60
           VTR+GIG+A LSF  MA+ P  S   QL LLA+A IGFDLGVQATL+AHQ+IVY I+P +
Sbjct: 299 VTRIGIGIATLSFALMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIAHQSIVYRIDPAS 358

Query: 61  RSRLNAVLFVGMFVGMAAGAALGSLLLAQWGWIGVVGLATVASLSALLVRL 111
           RSRLNAVLFVGMF+GMAAGAA+GSLLLAQ GW  V  LA   SL+AL VR+
Sbjct: 359 RSRLNAVLFVGMFIGMAAGAAIGSLLLAQLGWNAVTALAVATSLAALAVRV 409


>ref|YP_002235266.1| major facilitator superfamily protein [Burkholderia cenocepacia
           J2315]
 emb|CAR56529.1| Major Facilitator Superfamily protein [Burkholderia cenocepacia
           J2315]
          Length = 410

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 89/111 (80%)

Query: 1   VTRLGIGLAILSFVAMASGPAFSASGQLWLLALAAIGFDLGVQATLVAHQTIVYSIEPGA 60
           VTR+GIG+A  SF +MA+ P  S   QL LLA+A IGFDLGVQATL+AHQ+IVY I+P +
Sbjct: 297 VTRIGIGIATASFASMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIAHQSIVYRIDPAS 356

Query: 61  RSRLNAVLFVGMFVGMAAGAALGSLLLAQWGWIGVVGLATVASLSALLVRL 111
           RSRLNAVLFVGMF+GMAAGAALGS LLAQ GW  V  LA   SL+AL+VR+
Sbjct: 357 RSRLNAVLFVGMFIGMAAGAALGSSLLAQLGWNAVTALAVATSLAALVVRM 407