BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0415.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778133.1| transporter permease [Herbaspirillum seroped...   199   1e-49
ref|YP_001170689.1| hypothetical protein PST_0140 [Pseudomonas s...   118   3e-25
ref|YP_004285457.1| putative AEC family transporter [Acidiphiliu...   115   2e-24
ref|YP_001185646.1| auxin efflux carrier [Pseudomonas mendocina ...   115   2e-24
ref|ZP_04576594.1| auxin efflux carrier [Oxalobacter formigenes ...   115   2e-24

>ref|YP_003778133.1| transporter permease [Herbaspirillum seropedicae SmR1]
 gb|ADJ66225.1| transporter permease protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 114/125 (91%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           MLAIFN+VFPVF+LIFLG+ CRKRNILS  AA+ELNRFVI+L LPALLFDS++RL+ ADF
Sbjct: 1   MLAIFNIVFPVFSLIFLGWACRKRNILSGGAATELNRFVIWLALPALLFDSMSRLSAADF 60

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFGR 120
           +NLRFIAVFA+  A+VF+LTAW+++R+ AAA DIIIDSLG++YANVGFIGIPLC LAFG 
Sbjct: 61  ANLRFIAVFALSTALVFLLTAWLRWRERAAAADIIIDSLGSAYANVGFIGIPLCYLAFGH 120

Query: 121 DGMPP 125
           DG+PP
Sbjct: 121 DGLPP 125


>ref|YP_001170689.1| hypothetical protein PST_0140 [Pseudomonas stutzeri A1501]
 ref|YP_004712571.1| hypothetical protein PSTAB_0201 [Pseudomonas stutzeri ATCC 17588 =
           LMG 11199]
 gb|ABP77847.1| putative membrane protein [Pseudomonas stutzeri A1501]
 gb|AEA82083.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
 gb|AEJ03482.1| hypothetical protein PSTAB_0201 [Pseudomonas stutzeri ATCC 17588 =
           LMG 11199]
          Length = 310

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 77/125 (61%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           M ++ NVV PVFALI LGYLCR+   +    ASELNRFV++LGLPALLF  +A  T    
Sbjct: 1   MSSVINVVLPVFALILLGYLCRRSGRMGPTGASELNRFVVWLGLPALLFSVVATSTWEQL 60

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFGR 120
               FIA FAIG   VF  T   +  Q     D  +D+LG SYAN G++GIPLC+L  G 
Sbjct: 61  WQPGFIAAFAIGCLGVFAFTLAYRLLQKQPLVDASLDALGASYANTGYVGIPLCMLVLGD 120

Query: 121 DGMPP 125
           + + P
Sbjct: 121 EALQP 125


>ref|YP_004285457.1| putative AEC family transporter [Acidiphilium multivorum AIU301]
 dbj|BAJ82575.1| putative AEC family transporter [Acidiphilium multivorum AIU301]
          Length = 313

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 80/126 (63%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           ML+   +V PVFALIF+G+L R+  +L  NA +ELNRFV+YL LPALLFD +A    ++ 
Sbjct: 4   MLSTLIIVIPVFALIFVGWLARRLAVLGSNATTELNRFVVYLALPALLFDIVAHARLSEI 63

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFGR 120
               FIAVFA+G   VF LT  +  ++     D +ID L   YANVGFIG PL  +A GR
Sbjct: 64  WQPGFIAVFALGCLAVFALTILVSLKRPLHLADAVIDGLNAGYANVGFIGFPLVAVAIGR 123

Query: 121 DGMPPC 126
           + + P 
Sbjct: 124 NALGPT 129


>ref|YP_001185646.1| auxin efflux carrier [Pseudomonas mendocina ymp]
 gb|ABP82914.1| Auxin Efflux Carrier [Pseudomonas mendocina ymp]
          Length = 309

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 76/125 (60%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           M  + NV+ P+F LI +GY+CR+ N L   AASE+NRFV++LGLPALLF   A+   A  
Sbjct: 1   MSTVLNVLLPIFGLILVGYICRRSNRLGPTAASEMNRFVVWLGLPALLFSLTAKADWAHI 60

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFGR 120
               F+  F  G   VF+LT   +++   +  D  ID L   YAN G+IGIPLC+L  G 
Sbjct: 61  WQPGFLLAFTGGTLAVFLLTLAYRWKTTGSLVDASIDGLSAGYANTGYIGIPLCVLVLGE 120

Query: 121 DGMPP 125
           DGM P
Sbjct: 121 DGMAP 125


>ref|ZP_04576594.1| auxin efflux carrier [Oxalobacter formigenes HOxBLS]
 gb|EEO27556.1| auxin efflux carrier [Oxalobacter formigenes HOxBLS]
          Length = 308

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 6/128 (4%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           MLAI N+V PVFALI  GY+ RKRNILS +A +ELNRFV+YL LPAL+ D +   + A+ 
Sbjct: 1   MLAIANIVLPVFALIVAGYVLRKRNILSGHACTELNRFVVYLALPALMIDVMVNSSWAEL 60

Query: 61  SNLRFIAVFAIGIAVVF---VLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLA 117
               F   F IG+ ++F   +   WI+ +  A+A    ID+   SYAN G+IG+PLC L 
Sbjct: 61  YQPEFFYAFEIGVFLIFFGVLAVHWIRTKNPASA---TIDATSASYANTGYIGLPLCALT 117

Query: 118 FGRDGMPP 125
           FG D + P
Sbjct: 118 FGADKLGP 125