BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0413.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001859322.1| LysR family transcriptional regulator [Burkh... 196 2e-48 ref|YP_001631813.1| LysR family transcriptional regulator [Borde... 189 3e-46 ref|ZP_02884463.1| transcriptional regulator, LysR family [Burkh... 187 6e-46 ref|YP_003910582.1| LysR family transcriptional regulator [Burkh... 185 4e-45 ref|YP_004230517.1| LysR family transcriptional regulator [Burkh... 183 1e-44 >ref|YP_001859322.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC72276.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 312 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/175 (57%), Positives = 115/175 (65%), Gaps = 36/175 (20%) Query: 1 MPLRLPPLSSLRFFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRL 60 MPLRLPPL+SLRFFEAA R SFKLAAAELNVTPSAVSHGIV LE+TLGV LF+R PR+L Sbjct: 1 MPLRLPPLNSLRFFEAAARLGSFKLAAAELNVTPSAVSHGIVALEETLGVALFVREPRKL 60 Query: 61 TLTP------------------------------------XPTLASRWLLPRLQDFRTLW 84 +LTP PTLA+RWL+PRL DFR W Sbjct: 61 SLTPAGELYFPYIAEAFSLILTGTQRLPDGRTHRTISVSCAPTLAARWLVPRLHDFRAQW 120 Query: 85 PDTNVTVDTSPRQVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSPRSRQ 139 P+ +V+VDTS RQV P DGFDF IR+SR PV W +LFGE+LVPVCSP R+ Sbjct: 121 PNLDVSVDTSRRQVGFPVDGFDFGIRLSRGPVPGSDWNRLFGEKLVPVCSPACRE 175 >ref|YP_001631813.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43545.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 301 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/174 (58%), Positives = 112/174 (64%), Gaps = 36/174 (20%) Query: 1 MPLRLPPLSSLRFFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRL 60 MP RLPPLS+LRFFEAAGR SFKLAAAELNVTPSAVSHGIV LEQTLGV+LF+R PR L Sbjct: 1 MPRRLPPLSALRFFEAAGRLCSFKLAAAELNVTPSAVSHGIVGLEQTLGVDLFVRGPRGL 60 Query: 61 TLTP------------------------------------XPTLASRWLLPRLQDFRTLW 84 +LTP PTLASRWLLPRL FR W Sbjct: 61 SLTPEGADYLLYVSEALSLIATATQRLPGGPDGRGISVSCAPTLASRWLLPRLHGFRARW 120 Query: 85 PDTNVTVDTSPRQVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSPRSR 138 PD ++++DTS R V P DGFDFAIRM+R V SW +LF E+LVPVCSP R Sbjct: 121 PDVHISLDTSQRHVGFPVDGFDFAIRMARGVVPSASWTRLFSEELVPVCSPAYR 174 >ref|ZP_02884463.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT10001.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 309 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 97/159 (61%), Positives = 106/159 (66%), Gaps = 36/159 (22%) Query: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64 FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+TLGVELF+R PR ++LT Sbjct: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEETLGVELFVREPRGISLTATGADYLSY 72 Query: 65 ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96 PT ASRWLLPRLQ F+ WP+ NVTVDTS R Sbjct: 73 VSEAFSLIAIGTQRLPNHRANRPIALSCAPTFASRWLLPRLQHFKARWPNANVTVDTSHR 132 Query: 97 QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135 QV P DGFDFAIR+SRAPVA +W +LFGEQLVPVCSP Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGAAWTRLFGEQLVPVCSP 171 >ref|YP_003910582.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61291.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 296 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 95/159 (59%), Positives = 104/159 (65%), Gaps = 36/159 (22%) Query: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64 FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+ LGVELF+R PR ++LT Sbjct: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEEALGVELFVREPRGISLTATGADYLSY 72 Query: 65 ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96 PT ASRWLLPRLQ F+ WPD NVTVDTS R Sbjct: 73 VSEAFSLIATGTQRLPNHRANRPIALSCAPTFASRWLLPRLQRFKARWPDVNVTVDTSHR 132 Query: 97 QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135 QV P DGFDFAIR+SRAPVA +W +LFGE+ VPVCSP Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGTAWTRLFGEEFVPVCSP 171 >ref|YP_004230517.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX57457.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 308 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/159 (60%), Positives = 103/159 (64%), Gaps = 36/159 (22%) Query: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64 FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+ LGVELF+R PR ++LT Sbjct: 13 FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEEALGVELFVREPRGISLTATGADYLSY 72 Query: 65 ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96 PT ASRWLLPRL FR WP NVTVDTS R Sbjct: 73 VSEAFSLIAIGTQRLPNHRANRPIALSCAPTFASRWLLPRLPHFRARWPKVNVTVDTSHR 132 Query: 97 QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135 QV P DGFDFAIR+SRAPVA +W +LFGEQLVPVCSP Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGSAWTRLFGEQLVPVCSP 171