BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0409.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752609.1| low temperature requirement A [Collimonas fu... 513 e-143 ref|ZP_06688178.1| low temperature requirement A protein LtrA [A... 501 e-140 gb|EGP44039.1| low temperature requirement A protein family prot... 495 e-138 gb|EFV85472.1| low temperature requirement protein LtrA [Achromo... 489 e-136 ref|YP_003976641.1| low temperature requirement A protein family... 478 e-133 >ref|YP_004752609.1| low temperature requirement A [Collimonas fungivorans Ter331] gb|AEK61786.1| low temperature requirement A [Collimonas fungivorans Ter331] Length = 405 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/387 (64%), Positives = 300/387 (77%), Gaps = 3/387 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEA+V VELFFDL+YVFAVTQLSH LLENLT+ GAV+TL+LWFAVWL WQY Sbjct: 19 NLLRARDGHEAKVLSVELFFDLVYVFAVTQLSHHLLENLTLLGAVQTLILWFAVWLVWQY 78 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ + IR+LLFAIMLVGL+M+A +P+AF RGL+FA+ YA++Q+GRTLFV+ Sbjct: 79 TCWVTNWFDPDAMPIRVLLFAIMLVGLVMSAVLPDAFGERGLIFAVCYASMQIGRTLFVV 138 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGLSP-EYRLALWIIAVACEYFSPMIGFALP 190 LG+ HAL+ NF+RM GWL IS FWIAGGLS +YRL W +AVACEY SPMIG LP Sbjct: 139 LHLGRHHALSKNFQRMLGWLCISGAFWIAGGLSQGQYRLLFWTLAVACEYLSPMIGLWLP 198 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTXKE 250 G+GRS T++WTIEGGHLAERCQLFVIVALGE++LVTGAT+ H W+AP ++AF+V Sbjct: 199 GMGRSRTQDWTIEGGHLAERCQLFVIVALGESILVTGATIGHMANWDAPTLIAFLVAFLG 258 Query: 251 YLQQQ--YLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 L Y TSS+ G++AIVHS DPGRIGAYFHY HV+IVAGVI++AVG EL +AHP Sbjct: 259 SLAMWWIYFDTSSQAGTEAIVHSKDPGRIGAYFHYTHVLIVAGVIITAVGNELAMAHPAG 318 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 I SL L+ GP +YLLGN +YK VVYRR P SH+ GL LLA+L F Y TD LM+ G Sbjct: 319 HIETKSLATLVGGPMVYLLGNGIYKTVVYRRFPFSHMIGLALLAILVPFAYYTDQLMISG 378 Query: 369 LAAAILILTAAWESCSRRKTALAYQDE 395 L +LI+ A ES SRR + A + E Sbjct: 379 LTTVVLIIVAIQESISRRSSQTARRAE 405 >ref|ZP_06688178.1| low temperature requirement A protein LtrA [Achromobacter piechaudii ATCC 43553] gb|EFF74908.1| low temperature requirement A protein LtrA [Achromobacter piechaudii ATCC 43553] Length = 394 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 251/375 (66%), Positives = 292/375 (77%), Gaps = 3/375 (0%) Query: 13 LLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQYT 72 LLR RDGHEARV++VELFFDL+YVFAVTQLSH LL +LT+ GAV LVLWFAVWL WQYT Sbjct: 9 LLRRRDGHEARVTYVELFFDLVYVFAVTQLSHSLLHDLTLMGAVHALVLWFAVWLGWQYT 68 Query: 73 SWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVLC 132 WVTNWFDP+ L +RI+LFA+MLVGL+ AA +P+AF GL+FAI YA IQVGRT+F++ Sbjct: 69 CWVTNWFDPDALAMRIMLFAVMLVGLVAAAVLPDAFGANGLIFAICYALIQVGRTVFIVL 128 Query: 133 CLGKDHALTPNFRRMFGWLFISAVFWIAGGL-SPEYRLALWIIAVACEYFSPMIGFALPG 191 LG HAL+ NFRRM GWL +SAV WIAGGL S + RLALWI AVACEY SPMIGF LPG Sbjct: 129 HLGPHHALSANFRRMLGWLCVSAVLWIAGGLASGDARLALWIAAVACEYVSPMIGFRLPG 188 Query: 192 LGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX--K 249 +GRS T +WTIEGGH+AERCQLFVIVALGE LL+TGAT+ QW+ P ++A + Sbjct: 189 MGRSYTTDWTIEGGHIAERCQLFVIVALGETLLITGATLGDRGQWDTPTLIALLAAFLGT 248 Query: 250 EYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQR 309 + Y TSSKDGS AI H+SDPGR+GA FHYVHVI++AGVIVSAV ELVI HPD R Sbjct: 249 AAMWWVYFDTSSKDGSHAIEHASDPGRMGARFHYVHVILIAGVIVSAVANELVIQHPDGR 308 Query: 310 IGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGL 369 I +L L+ GPALYLLGN +YK VVY R PLSH+ GL+LLA LA YVTD LMVGGL Sbjct: 309 IATPALAALLCGPALYLLGNGIYKSVVYLRFPLSHVVGLILLAALAPVAYVTDNLMVGGL 368 Query: 370 AAAILILTAAWESCS 384 ++I+ A WES S Sbjct: 369 TTIVMIVVAVWESVS 383 >gb|EGP44039.1| low temperature requirement A protein family protein [Achromobacter xylosoxidans AXX-A] Length = 391 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/384 (66%), Positives = 294/384 (76%), Gaps = 3/384 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEARV+FVELFFDL+YVFAVTQLSH LL +LT+ GA+ TLVLWFAVWL WQY Sbjct: 8 NLLRHRDGHEARVTFVELFFDLVYVFAVTQLSHSLLHDLTLMGALHTLVLWFAVWLGWQY 67 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ L +R++LF +MLVGL+ AA +P AF GL+FAI Y IQVGRTLFV+ Sbjct: 68 TCWVTNWFDPDALPMRLMLFGVMLVGLIAAAVLPGAFGENGLIFAICYVLIQVGRTLFVV 127 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGLSP-EYRLALWIIAVACEYFSPMIGFALP 190 LG H L PNFRRM GWL ISAV WIAGGLS + RL LWI+AVACEY SPM GF LP Sbjct: 128 LHLGPSHPLAPNFRRMLGWLCISAVLWIAGGLSSGDTRLVLWILAVACEYLSPMAGFWLP 187 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX-- 248 GLGRS TREWTIEGGHLAERCQLFVIVALGE LL+TGAT+ W+ P ++A + Sbjct: 188 GLGRSTTREWTIEGGHLAERCQLFVIVALGETLLITGATLGEHPHWDIPTLIALLAAFLG 247 Query: 249 KEYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 + Y TSSKDGS+AI H +DPGR+GAYFHYVHVI++AGVIVSAV ELVI HPD Sbjct: 248 TAAMWWVYFDTSSKDGSEAIAHHADPGRVGAYFHYVHVILIAGVIVSAVANELVILHPDG 307 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 RI + L+ GPALYLLGN +YK VVY R PLSH+ GLVLLA+LA +VTD LMVGG Sbjct: 308 RIVTAAAAALLGGPALYLLGNGIYKTVVYGRFPLSHVIGLVLLAVLAPIAFVTDNLMVGG 367 Query: 369 LAAAILILTAAWESCSRRKTALAY 392 L I++L A WES SRR+ A+ Sbjct: 368 LTTLIMMLVAGWESVSRRRARAAH 391 >gb|EFV85472.1| low temperature requirement protein LtrA [Achromobacter xylosoxidans C54] Length = 391 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 258/384 (67%), Positives = 297/384 (77%), Gaps = 3/384 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEARV+FVELFFDL+YVFAVTQLSH LL +LT+ GA+ TLVLWFAVWL WQY Sbjct: 8 NLLRHRDGHEARVTFVELFFDLVYVFAVTQLSHSLLHDLTLMGALHTLVLWFAVWLGWQY 67 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ L +R++LF +ML GL+ AA +P AF GL+FA+ Y IQVGRTLFV+ Sbjct: 68 TCWVTNWFDPDALPMRLMLFGVMLAGLVAAAVLPGAFGENGLIFAVCYVLIQVGRTLFVV 127 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGL-SPEYRLALWIIAVACEYFSPMIGFALP 190 LG+ H L PNFRRM GWL ISAVFWIAGGL S + RLALWI+AVACEYFSPM GF LP Sbjct: 128 LHLGRSHPLAPNFRRMLGWLCISAVFWIAGGLASGDTRLALWIVAVACEYFSPMAGFWLP 187 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX-- 248 GLGRS TREWTIEGGHLAERCQLFVIVALGE LL+TGAT+ W+ P ++A + Sbjct: 188 GLGRSTTREWTIEGGHLAERCQLFVIVALGETLLITGATLGEHPHWDIPTLIALLAAFLG 247 Query: 249 KEYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 + Y TSSKDGS+AI H +DPGR+GAYFHYVHVI++AGVIVSAV ELVI HPD Sbjct: 248 TAAMWWVYFDTSSKDGSEAIAHHADPGRVGAYFHYVHVILIAGVIVSAVANELVILHPDG 307 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 RI + L+ GPALYLLGN VYK VVY R PLSH+AGL LLA+LA +VTD LMVGG Sbjct: 308 RIVTAAAAALLGGPALYLLGNGVYKTVVYGRFPLSHVAGLALLAILAPIAFVTDNLMVGG 367 Query: 369 LAAAILILTAAWESCSRRKTALAY 392 L I++L A WES SRR+ A+ Sbjct: 368 LTTLIMMLVAGWESVSRRRMRPAH 391 >ref|YP_003976641.1| low temperature requirement A protein family protein [Achromobacter xylosoxidans A8] gb|ADP13926.1| bacterial low temperature requirement A protein family protein [Achromobacter xylosoxidans A8] Length = 397 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/379 (66%), Positives = 294/379 (77%), Gaps = 3/379 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEARV++VELFFDL+YVFAVTQ+SH LL +LT+ GA+ LVLWFAVWL WQY Sbjct: 8 NLLRRRDGHEARVTYVELFFDLVYVFAVTQISHSLLHDLTLMGALHALVLWFAVWLGWQY 67 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ + +R++LFA+ML GL+ AA+P AF GLVFA++Y IQVGRTLF++ Sbjct: 68 TCWVTNWFDPDAVPMRVMLFAVMLAGLVSGAALPGAFGATGLVFAVSYVLIQVGRTLFIV 127 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGLSPE-YRLALWIIAVACEYFSPMIGFALP 190 LG H L PNFRRM WL +SAV W+AGGLS + RLALW +AVACEY SPMIGF P Sbjct: 128 LHLGPAHPLAPNFRRMLAWLCVSAVLWVAGGLSQDGTRLALWALAVACEYLSPMIGFRFP 187 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX-- 248 GLGRS TREWTIEGGHLAERCQLFVIVALGE LL++GAT+A +W AP ++A + Sbjct: 188 GLGRSSTREWTIEGGHLAERCQLFVIVALGETLLISGATLADLERWNAPALIALLAAFLG 247 Query: 249 KEYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 + Y TSS+DGS+AIVHS DPGRIGA+FHYVHVI++AGVIVSAV ELVI HPD Sbjct: 248 TAAMWWVYFDTSSRDGSEAIVHSDDPGRIGAWFHYVHVILIAGVIVSAVANELVILHPDG 307 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 RI + LI GPALYL GN +YK VVY R PLSH+ GLVLLA+LA +VTD LMVGG Sbjct: 308 RIAMPAAAALIGGPALYLAGNGIYKTVVYGRFPLSHVVGLVLLAVLAPVAFVTDNLMVGG 367 Query: 369 LAAAILILTAAWESCSRRK 387 L I+IL AAWES SRR+ Sbjct: 368 LTTLIMILVAAWESVSRRR 386